Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G32540.1 | GSMUA_Achr11P... | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g077060.2.1 | Tomato | plastid | 84.4 | 82.07 |
| EES14592 | Sorghum | plastid | 82.98 | 81.82 |
| KRH77212 | Soybean | plastid | 82.98 | 79.59 |
| GSMUA_AchrUn_... | Banana | plastid | 84.4 | 79.33 |
| TraesCS1D01G278800.2 | Wheat | plastid | 80.85 | 78.08 |
| TraesCS1B01G288600.3 | Wheat | plastid | 80.85 | 78.08 |
| TraesCS1A01G279500.3 | Wheat | plastid | 80.85 | 78.08 |
| PGSC0003DMT400045143 | Potato | plastid | 83.69 | 77.63 |
| KRH04330 | Soybean | plastid | 81.56 | 76.67 |
| Bra010171.1-P | Field mustard | plastid | 80.14 | 71.97 |
| KRH58208 | Soybean | plastid | 58.87 | 67.48 |
| Os08t0159500-01 | Rice | nucleus | 83.69 | 64.13 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 82.27 | 60.73 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 85.82 | 58.45 |
| AT1G32540.1 | Thale cress | extracellular | 76.6 | 57.75 |
| CDY68066 | Canola | plastid | 55.32 | 55.32 |
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 29.79 | 46.15 |
| GSMUA_Achr7P00950_001 | Banana | mitochondrion | 53.19 | 41.9 |
| HORVU1Hr1G073170.3 | Barley | plastid | 81.56 | 40.64 |
| GSMUA_Achr7P08020_001 | Banana | mitochondrion | 48.23 | 37.99 |
| Zm00001d049525_P004 | Maize | plastid | 52.48 | 36.82 |
| GSMUA_Achr6P31340_001 | Banana | cytosol | 26.24 | 30.08 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P04710_001 | EnsemblPlants:GSMUA_Achr7T04710_001 | EnsemblPlantsGene:GSMUA_Achr7G04710_001 | InterPro:Multihaem_cyt_sf | InterPro:Znf_LSD1 | PANTHER:PTHR31747 |
| PANTHER:PTHR31747:SF1 | PFAM:PF06943 | SEG:seg | SUPFAM:SSF48695 | TIGRFAMs:TIGR01053 | UniParc:UPI00029693D0 |
| UniProt:M0TER1 | MapMan:27.2.1 | : | : | : | : |
Description
LSD1 zinc finger domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G04710_001]
Coordinates
chr7:+:3542253..3544738
Molecular Weight (calculated)
14674.0 Da
IEP (calculated)
8.071
GRAVY (calculated)
0.277
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVPLAPYPT PPAPLAPPNG GQSQLVCSGC RNLLLYPQGA KSVCCAVCRA VTTVPPPGTE MAQLICGGCH TLLMYIRGAS SVQCSCCHTV NLALEANQVA
101: HVNCGNCQML LMYQYGARSV KCAVCNFVTS IGASPSTEQK A
101: HVNCGNCQML LMYQYGARSV KCAVCNFVTS IGASPSTEQK A
001: MHTWKNQIFS DSQFVLLFMG KNCSIIFPEP HLFISHVFII HLNVLFLVKK INKNNLRFVG STSGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.