Factsheet for GSMUA_Achr7P00950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	64.25	65.71
KRH59208	Soybean	extracellular	64.25	64.97
KRH43079	Soybean	extracellular	64.25	64.97
GSMUA_Achr7P08020_001	Banana	mitochondrion	64.8	64.8
Os03t0639600-01	Rice	mitochondrion, plastid	65.36	62.9
GSMUA_Achr6P31340_001	Banana	cytosol	42.46	61.79
Os12t0611000-01	Rice	plastid	58.66	61.05
TraesCS5B01G054000.1	Wheat	mitochondrion	60.89	60.89
TraesCS5D01G059500.1	Wheat	mitochondrion	60.89	60.89
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	54.75	60.49
PGSC0003DMT400054616	Potato	extracellular	58.66	60.34
KRH37706	Soybean	mitochondrion	58.66	60.34
TraesCS5D01G386200.2	Wheat	mitochondrion	60.89	60.22
TraesCS5A01G376200.1	Wheat	mitochondrion	60.34	60.0
TraesCS5B01G379800.1	Wheat	mitochondrion	60.34	60.0
Zm00001d033262_P001	Maize	extracellular	62.01	58.42
Bra020924.1-P	Field mustard	cytosol	40.22	57.14
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	61.45	55.84
CDX98669	Canola	cytosol	59.22	55.5
CDX94003	Canola	mitochondrion	59.22	54.92
Bra038804.1-P	Field mustard	cytosol	59.22	54.64
CDX76459	Canola	cytosol	54.75	54.44
CDX78991	Canola	cytosol	57.54	53.93
GSMUA_Achr7P04710_001	Banana	plastid	41.9	53.19
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	57.54	53.09
Bra013460.1-P	Field mustard	cytosol	56.98	52.85
KRH12749	Soybean	extracellular	58.66	51.98
GSMUA_AchrUn_...	Banana	plastid	41.9	50.0
AT4G20380.8	Thale cress	extracellular	57.54	49.05
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	44.69	47.9
HORVU5Hr1G093280.4	Barley	mitochondrion	60.89	47.39
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	63.13	43.63
KXG23966	Sorghum	mitochondrion	60.89	41.76
GSMUA_Achr7P24410_001	Banana	mitochondrion	20.67	40.66
CDY49490	Canola	plastid	54.19	40.25
GSMUA_Achr3P27560_001	Banana	extracellular	44.13	38.16
Zm00001d041474_P001	Maize	mitochondrion	59.22	34.3

Protein Annotations

EnsemblPlants:GSMUA_Achr7P00950_001	EnsemblPlants:GSMUA_Achr7T00950_001	EnsemblPlantsGene:GSMUA_Achr7G00950_001	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3
PFAM:PF06943	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI000296440A	UniProt:M0TDN5	MapMan:27.2.1

Description

LSD1 zinc finger domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G00950_001]

Coordinates

chr7:-:755976..762381

Molecular Weight (calculated)

18781.2 Da

IEP (calculated)

8.444

GRAVY (calculated)

0.202

Length

179 amino acids

Sequence
(BLAST)

001: MISSGMQGQL VCSGCRNVLL YPRGAASVCC AICSTITTVP PPGMEMAQLI CGGCRTLLMH VHGATTVRCS CCNTINITRP VNQVANVRCG HCHTTLMYPY
101: GAPSVKCAIC HYVTNVGQMD GMRLPVSTMH RLNGPTPAPP SASASQVQNT TVVVENPMSV DESGKLVSNL VVGVTTGKK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.