Factsheet for TraesCS5D01G386200.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G376200.1	Wheat	mitochondrion	97.24	97.78
TraesCS5B01G379800.1	Wheat	mitochondrion	96.69	97.22
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	77.35	80.0
Os03t0639600-01	Rice	mitochondrion, plastid	79.56	77.42
HORVU5Hr1G093280.4	Barley	mitochondrion	97.24	76.52
TraesCS5D01G059500.1	Wheat	mitochondrion	66.3	67.04
Zm00001d033262_P001	Maize	extracellular	68.51	65.26
GSMUA_Achr7P00950_001	Banana	mitochondrion	60.22	60.89
KRH43079	Soybean	extracellular	58.56	59.89
KRH59208	Soybean	extracellular	58.01	59.32
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	52.49	58.64
PGSC0003DMT400054616	Potato	extracellular	55.8	58.05
Bra020924.1-P	Field mustard	cytosol	38.12	54.76
KRH37706	Soybean	mitochondrion	52.49	54.6
CDX98669	Canola	cytosol	56.35	53.4
CDX76459	Canola	cytosol	52.49	52.78
Bra038804.1-P	Field mustard	cytosol	55.8	52.06
CDX94003	Canola	mitochondrion	55.25	51.81
CDX78991	Canola	cytosol	54.14	51.31
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	54.7	51.03
Bra013460.1-P	Field mustard	cytosol	54.14	50.78
TraesCS1D01G278800.2	Wheat	plastid	39.23	48.63
AT4G20380.8	Thale cress	extracellular	56.35	48.57
KRH12749	Soybean	extracellular	52.49	47.03
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	43.09	46.71
TraesCS7D01G307000.1	Wheat	cytosol	32.6	44.7
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	56.91	39.77
CDY49490	Canola	plastid	51.38	38.59
TraesCS3D01G233000.2	Wheat	nucleus	11.6	2.33

Protein Annotations

EnsemblPlants:TraesCS5D01G386200.2	EnsemblPlantsGene:TraesCS5D01G386200	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF13	PFAM:PF06943
SEG:seg	TIGRFAMs:TIGR01053	MapMan:27.2.1	:	:	:

Description

No Description!

Coordinates

chr5D:+:455827846..455832068

Molecular Weight (calculated)

19127.4 Da

IEP (calculated)

8.494

GRAVY (calculated)

0.090

Length

181 amino acids

Sequence
(BLAST)

001: MIAGMQSQIV CHRCRRVLAY PSGAPSVCCA MCRAITAVPP PAPAVEMAQL ICGGCRTLLM YTRNADTVRC SCCSTVNLVR PVNNIAHVNC GRCRTTLMYP
101: HGAPSVKCAI CDYITNTGIN TMSPAPCPRP TSNESAYNAS SASVPTPQPQ NVTVVVENPM TVDEKGKLVS NVVVGITPGK N

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.