Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 3
- mitochondrion 3
- plastid 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78991 | Canola | cytosol | 71.43 | 78.53 |
| CDX82760 | Canola | cytosol, extracellular, mitochondrion, plastid | 72.38 | 78.35 |
| Bra013460.1-P | Field mustard | cytosol | 71.9 | 78.24 |
| CDX76459 | Canola | cytosol | 66.67 | 77.78 |
| CDX98669 | Canola | cytosol | 70.0 | 76.96 |
| CDX94003 | Canola | mitochondrion | 70.48 | 76.68 |
| Bra020924.1-P | Field mustard | cytosol | 45.24 | 75.4 |
| Bra038804.1-P | Field mustard | cytosol | 69.52 | 75.26 |
| KRH43079 | Soybean | extracellular | 59.05 | 70.06 |
| KRH59208 | Soybean | extracellular | 58.57 | 69.49 |
| KRH37706 | Soybean | mitochondrion | 57.14 | 68.97 |
| CDY31440 | Canola | endoplasmic reticulum, extracellular, plastid | 53.33 | 67.07 |
| PGSC0003DMT400054616 | Potato | extracellular | 54.29 | 65.52 |
| Solyc02g069720.2.1 | Tomato | extracellular, mitochondrion | 48.57 | 62.96 |
| Os12t0611000-01 | Rice | plastid | 49.52 | 60.47 |
| KRH12749 | Soybean | extracellular | 56.19 | 58.42 |
| GSMUA_Achr7P00950_001 | Banana | mitochondrion | 49.05 | 57.54 |
| Os03t0639600-01 | Rice | mitochondrion, plastid | 50.95 | 57.53 |
| EER91186 | Sorghum | extracellular, mitochondrion, peroxisome, plastid | 47.62 | 57.14 |
| TraesCS5A01G376200.1 | Wheat | mitochondrion | 48.57 | 56.67 |
| TraesCS5B01G054000.1 | Wheat | mitochondrion | 48.1 | 56.42 |
| TraesCS5D01G059500.1 | Wheat | mitochondrion | 48.1 | 56.42 |
| TraesCS5D01G386200.2 | Wheat | mitochondrion | 48.57 | 56.35 |
| TraesCS5B01G379800.1 | Wheat | mitochondrion | 48.1 | 56.11 |
| GSMUA_Achr7P08020_001 | Banana | mitochondrion | 47.62 | 55.87 |
| Zm00001d033262_P001 | Maize | extracellular | 49.05 | 54.21 |
| GSMUA_Achr6P31340_001 | Banana | cytosol | 30.48 | 52.03 |
| Os08t0130100-01 | Rice | cytosol | 36.19 | 51.7 |
| TraesCS5A01G048900.1 | Wheat | cytosol, mitochondrion | 48.1 | 51.27 |
| TraesCS7A01G310500.1 | Wheat | cytosol | 29.52 | 46.97 |
| HORVU7Hr1G074030.2 | Barley | cytosol | 29.05 | 46.21 |
| Zm00001d035195_P001 | Maize | mitochondrion | 32.86 | 46.0 |
| TraesCS7D01G307000.1 | Wheat | cytosol | 28.57 | 45.45 |
| OQU79832 | Sorghum | mitochondrion | 34.29 | 45.0 |
| HORVU5Hr1G093280.4 | Barley | mitochondrion | 48.57 | 44.35 |
| VIT_10s0092g00230.t01 | Wine grape | extracellular, plasma membrane | 54.29 | 44.02 |
| Zm00001d049625_P001 | Maize | plastid | 24.29 | 43.22 |
| KXG23966 | Sorghum | mitochondrion | 48.1 | 38.7 |
| AT1G32540.1 | Thale cress | extracellular | 34.29 | 38.5 |
| Zm00001d041474_P001 | Maize | mitochondrion | 48.1 | 32.69 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 22.86 | 30.97 |
Protein Annotations
| MapMan:27.2.1 | EntrezGene:827786 | ProteinID:AEE84322.1 | ArrayExpress:AT4G20380 | EnsemblPlantsGene:AT4G20380 | RefSeq:AT4G20380 |
| TAIR:AT4G20380 | RefSeq:AT4G20380-TAIR-G | EnsemblPlants:AT4G20380.8 | TAIR:AT4G20380.8 | UniProt:F4JUW0 | GO:GO:0000303 |
| GO:GO:0001666 | GO:GO:0002240 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009626 | GO:GO:0009628 | GO:GO:0009653 |
| GO:GO:0009719 | GO:GO:0009862 | GO:GO:0009987 | GO:GO:0010104 | GO:GO:0010310 | GO:GO:0010602 |
| GO:GO:0010618 | Symbol:LSD1 | RefSeq:NP_001154257.1 | PFAM:PF06943 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF3 | TIGRFAMs:TIGR01053 | UniParc:UPI0001A7B238 |
| InterPro:Znf_LSD1 | SEG:seg | : | : | : | : |
Description
LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
Coordinates
chr4:+:11004517..11006788
Molecular Weight (calculated)
22365.2 Da
IEP (calculated)
8.443
GRAVY (calculated)
-0.077
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG ASSVRCSCCQ TTNLVPESSF TLLFDNILKV LKTKLLDGPG
101: GLAHSNQVAH APSSQVAQIN CGHCRTTLMY PYGASSVKCA VCQFVTNVNM SNGRVPLPTN RPNGTACPPS TSTSTPPSQT QTVVVENPMS VDESGKLVSN
201: VVVGVTTDKK
101: GLAHSNQVAH APSSQVAQIN CGHCRTTLMY PYGASSVKCA VCQFVTNVNM SNGRVPLPTN RPNGTACPPS TSTSTPPSQT QTVVVENPMS VDESGKLVSN
201: VVVGVTTDKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.