Factsheet for Bra013460.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 3
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78991	Canola	cytosol	96.89	97.91
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	96.89	96.39
Bra038804.1-P	Field mustard	cytosol	83.42	82.99
Bra020924.1-P	Field mustard	cytosol	49.74	76.19
AT4G20380.8	Thale cress	extracellular	78.24	71.9
KRH43079	Soybean	extracellular	65.28	71.19
KRH59208	Soybean	extracellular	64.77	70.62
KRH37706	Soybean	mitochondrion	62.18	68.97
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	53.89	64.2
PGSC0003DMT400054616	Potato	extracellular	57.51	63.79
Os12t0611000-01	Rice	plastid	56.48	63.37
KRH12749	Soybean	extracellular	62.69	59.9
TraesCS5D01G059500.1	Wheat	mitochondrion	54.92	59.22
TraesCS5B01G054000.1	Wheat	mitochondrion	54.92	59.22
GSMUA_Achr7P00950_001	Banana	mitochondrion	52.85	56.98
GSMUA_Achr7P08020_001	Banana	mitochondrion	51.81	55.87
Os03t0639600-01	Rice	mitochondrion, plastid	53.37	55.38
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	49.74	54.86
GSMUA_Achr6P31340_001	Banana	cytosol	34.72	54.47
TraesCS5A01G376200.1	Wheat	mitochondrion	50.78	54.44
TraesCS5D01G386200.2	Wheat	mitochondrion	50.78	54.14
TraesCS5B01G379800.1	Wheat	mitochondrion	50.26	53.89
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	54.92	53.81
Zm00001d033262_P001	Maize	extracellular	52.85	53.68
Os08t0130100-01	Rice	cytosol	37.31	48.98
Bra010171.1-P	Field mustard	plastid	38.34	47.13
Zm00001d035195_P001	Maize	mitochondrion	35.75	46.0
TraesCS7A01G310500.1	Wheat	cytosol	31.09	45.45
Zm00001d049625_P001	Maize	plastid	26.94	44.07
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	59.07	44.02
HORVU7Hr1G074030.2	Barley	cytosol	30.05	43.94
OQU79832	Sorghum	mitochondrion	36.27	43.75
TraesCS7D01G307000.1	Wheat	cytosol	29.53	43.18
HORVU5Hr1G093280.4	Barley	mitochondrion	50.78	42.61
KXG23966	Sorghum	mitochondrion	52.85	39.08
Bra020902.1-P	Field mustard	cytosol	24.87	34.29
Zm00001d041474_P001	Maize	mitochondrion	52.85	33.01

Protein Annotations

EnsemblPlants:Bra013460.1	EnsemblPlants:Bra013460.1-P	EnsemblPlantsGene:Bra013460	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3
PFAM:PF06943	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI00025469F9	UniProt:M4DAF0	MapMan:27.2.1

Description

AT4G20380 (E=3e-071) LSD1 | zinc finger protein (LSD1)

Coordinates

chrA01:+:5808906..5810084

Molecular Weight (calculated)

20447.8 Da

IEP (calculated)

8.623

GRAVY (calculated)

-0.154

Length

193 amino acids

Sequence
(BLAST)

001: MQDQLVCHGC RNTLMYPRGA TNVRCALCHI VNMVPLHPHP HPPPPHHAHA GMDMAHIVCG GCRTMLMYTR GASSVRCSCC QTVNLVPGPP PSNQVAHINC
101: GNCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLASNR PNGTASPGTM PSTSTQSTPP SQTQTVVVEN PMSVNESGKL VSNVVVGVTT GQK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.