Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G307000.1 | Wheat | cytosol | 92.42 | 92.42 |
| HORVU7Hr1G074030.2 | Barley | cytosol | 92.42 | 92.42 |
| Zm00001d049625_P001 | Maize | plastid | 52.27 | 58.47 |
| Os08t0130100-01 | Rice | cytosol | 64.39 | 57.82 |
| Zm00001d035195_P001 | Maize | mitochondrion | 59.85 | 52.67 |
| OQU79832 | Sorghum | mitochondrion | 60.61 | 50.0 |
| Bra020924.1-P | Field mustard | cytosol | 43.94 | 46.03 |
| GSMUA_Achr6P31340_001 | Banana | cytosol | 37.12 | 39.84 |
| Solyc02g069720.2.1 | Tomato | extracellular, mitochondrion | 44.7 | 36.42 |
| KRH59208 | Soybean | extracellular | 46.21 | 34.46 |
| KRH43079 | Soybean | extracellular | 46.21 | 34.46 |
| TraesCS5A01G376200.1 | Wheat | mitochondrion | 46.97 | 34.44 |
| CDY31440 | Canola | endoplasmic reticulum, extracellular, plastid | 43.18 | 34.13 |
| GSMUA_Achr7P08020_001 | Banana | mitochondrion | 45.45 | 33.52 |
| TraesCS5A01G048900.1 | Wheat | cytosol, mitochondrion | 50.0 | 33.5 |
| PGSC0003DMT400054616 | Potato | extracellular | 43.94 | 33.33 |
| CDX76459 | Canola | cytosol | 45.45 | 33.33 |
| KRH37706 | Soybean | mitochondrion | 43.18 | 32.76 |
| CDX98669 | Canola | cytosol | 46.21 | 31.94 |
| CDX94003 | Canola | mitochondrion | 46.21 | 31.61 |
| Bra038804.1-P | Field mustard | cytosol | 46.21 | 31.44 |
| CDX78991 | Canola | cytosol | 45.45 | 31.41 |
| Bra013460.1-P | Field mustard | cytosol | 45.45 | 31.09 |
| CDX82760 | Canola | cytosol, extracellular, mitochondrion, plastid | 45.45 | 30.93 |
| AT4G20380.8 | Thale cress | extracellular | 46.97 | 29.52 |
| KRH12749 | Soybean | extracellular | 43.18 | 28.22 |
| TraesCS1A01G279500.3 | Wheat | plastid | 29.55 | 26.71 |
| VIT_10s0092g00230.t01 | Wine grape | extracellular, plasma membrane | 46.97 | 23.94 |
| CDY49490 | Canola | plastid | 41.67 | 22.82 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 7.58 | 1.54 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G310500.1 | EnsemblPlantsGene:TraesCS7A01G310500 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF5 | PFAM:PF06943 |
| TIGRFAMs:TIGR01053 | MapMan:27.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:439575115..439577145
Molecular Weight (calculated)
14147.9 Da
IEP (calculated)
9.272
GRAVY (calculated)
-0.319
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRCTSSVNY QTETATMSEL ICNGCFSLVL YNRGAANVRC SGCNRVNSTR SASQIAHLTC GRCRTTLMYP PGASTVGCAN CQHVNPVRTQ GSSAPPDAHA
101: RPQTVLVENP RTMNDKGKLV SNVAVGVTSW KR
101: RPQTVLVENP RTMNDKGKLV SNVAVGVTSW KR
001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK
Arabidopsis Description
LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.