Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035195_P001 | Maize | mitochondrion | 82.2 | 64.67 |
| OQU79832 | Sorghum | mitochondrion | 83.05 | 61.25 |
| HORVU7Hr1G074030.2 | Barley | cytosol | 59.32 | 53.03 |
| TraesCS7D01G307000.1 | Wheat | cytosol | 59.32 | 53.03 |
| TraesCS7A01G310500.1 | Wheat | cytosol | 58.47 | 52.27 |
| Os08t0130100-01 | Rice | cytosol | 63.56 | 51.02 |
| Bra020924.1-P | Field mustard | cytosol | 41.53 | 38.89 |
| GSMUA_Achr6P31340_001 | Banana | cytosol | 36.44 | 34.96 |
| KRH43079 | Soybean | extracellular | 45.76 | 30.51 |
| KRH59208 | Soybean | extracellular | 45.76 | 30.51 |
| Zm00001d033262_P001 | Maize | extracellular | 48.31 | 30.0 |
| CDX76459 | Canola | cytosol | 45.76 | 30.0 |
| Solyc02g069720.2.1 | Tomato | extracellular, mitochondrion | 40.68 | 29.63 |
| GSMUA_Achr7P08020_001 | Banana | mitochondrion | 43.22 | 28.49 |
| KRH37706 | Soybean | mitochondrion | 41.53 | 28.16 |
| Bra038804.1-P | Field mustard | cytosol | 45.76 | 27.84 |
| CDX98669 | Canola | cytosol | 44.92 | 27.75 |
| PGSC0003DMT400054616 | Potato | extracellular | 40.68 | 27.59 |
| CDY31440 | Canola | endoplasmic reticulum, extracellular, plastid | 38.98 | 27.54 |
| CDX94003 | Canola | mitochondrion | 44.92 | 27.46 |
| CDX78991 | Canola | cytosol | 44.07 | 27.23 |
| Bra013460.1-P | Field mustard | cytosol | 44.07 | 26.94 |
| CDX82760 | Canola | cytosol, extracellular, mitochondrion, plastid | 44.07 | 26.8 |
| KRH12749 | Soybean | extracellular | 43.22 | 25.25 |
| AT4G20380.8 | Thale cress | extracellular | 43.22 | 24.29 |
| CDY49490 | Canola | plastid | 45.76 | 22.41 |
| VIT_10s0092g00230.t01 | Wine grape | extracellular, plasma membrane | 44.07 | 20.08 |
| Zm00001d041474_P001 | Maize | mitochondrion | 44.92 | 17.15 |
| Zm00001d049525_P004 | Maize | plastid | 28.81 | 16.92 |
| Zm00001d044463_P001 | Maize | nucleus | 20.34 | 2.71 |
Protein Annotations
| EnsemblPlants:Zm00001d049625_P001 | EnsemblPlants:Zm00001d049625_T001 | EnsemblPlantsGene:Zm00001d049625 | EntrezGene:103653112 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 |
| PANTHER:PTHR31747:SF5 | PFAM:PF06943 | ProteinID:AQK50936.1 | TIGRFAMs:TIGR01053 | UniParc:UPI0004DE9B07 | UniProt:A0A1D6PWL2 |
| MapMan:27.2.1 | : | : | : | : | : |
Description
Protein LSD1
Coordinates
chr4:-:37976398..37977580
Molecular Weight (calculated)
12603.5 Da
IEP (calculated)
9.681
GRAVY (calculated)
-0.190
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGPAMSELV CGGCFTMLVH SRSATNVRCP HCGRLGSTRS GNQMGHLSCG QCRTTLAYPP GATTVGCPTC RNVNPVPTRV RMDARPQQTM VLVENPKTLD
101: EKGKLVSSVA VGVTSWKR
101: EKGKLVSSVA VGVTSWKR
001: MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG ASSVRCSCCQ TTNLVPAHSN QVAHAPSSQV AQINCGHCRT
101: TLMYPYGASS VKCAVCQFVT NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT TDKK
101: TLMYPYGASS VKCAVCQFVT NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT TDKK
Arabidopsis Description
LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.