Factsheet for GSMUA_Achr7P08020_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P31340_001	Banana	cytosol	46.37	67.48
GSMUA_Achr7P00950_001	Banana	mitochondrion	64.8	64.8
KRH59208	Soybean	extracellular	60.34	61.02
KRH43079	Soybean	extracellular	60.34	61.02
Bra020924.1-P	Field mustard	cytosol	40.78	57.94
KRH37706	Soybean	mitochondrion	55.31	56.9
CDX76459	Canola	cytosol	56.98	56.67
PGSC0003DMT400054616	Potato	extracellular	53.63	55.17
CDX98669	Canola	cytosol	58.1	54.45
Bra038804.1-P	Field mustard	cytosol	57.54	53.09
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	48.04	53.09
CDX94003	Canola	mitochondrion	56.98	52.85
CDX78991	Canola	cytosol	55.87	52.36
Bra013460.1-P	Field mustard	cytosol	55.87	51.81
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	55.87	51.55
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	47.49	50.9
KRH12749	Soybean	extracellular	55.31	49.01
Os08t0130100-01	Rice	cytosol	40.22	48.98
GSMUA_Achr7P04710_001	Banana	plastid	37.99	48.23
AT4G20380.8	Thale cress	extracellular	55.87	47.62
HORVU7Hr1G074030.2	Barley	cytosol	34.08	46.21
Zm00001d035195_P001	Maize	mitochondrion	38.55	46.0
OQU79832	Sorghum	mitochondrion	40.78	45.62
TraesCS7D01G307000.1	Wheat	cytosol	33.52	45.45
TraesCS7A01G310500.1	Wheat	cytosol	33.52	45.45
GSMUA_AchrUn_...	Banana	plastid	37.99	45.33
Zm00001d049625_P001	Maize	plastid	28.49	43.22
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	62.01	42.86
CDY49490	Canola	plastid	53.07	39.42
GSMUA_Achr7P24410_001	Banana	mitochondrion	18.44	36.26
GSMUA_Achr3P27560_001	Banana	extracellular	39.11	33.82

Protein Annotations

EnsemblPlants:GSMUA_Achr7P08020_001	EnsemblPlants:GSMUA_Achr7T08020_001	EnsemblPlantsGene:GSMUA_Achr7G08020_001	InterPro:Multihaem_cyt_sf	InterPro:Znf_LSD1	PANTHER:PTHR31747
PANTHER:PTHR31747:SF3	PFAM:PF06943	SUPFAM:SSF48695	TIGRFAMs:TIGR01053	UniParc:UPI000294A77F	UniProt:M0TFP2
MapMan:27.2.1	:	:	:	:	:

Description

LSD1 zinc finger domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G08020_001]

Coordinates

chr7:+:5984885..5993343

Molecular Weight (calculated)

19139.5 Da

IEP (calculated)

8.437

GRAVY (calculated)

0.034

Length

179 amino acids

Sequence
(BLAST)

001: MQSQLVCNGC RTILLYPRGA TNVRCAICNT MTPTLPAGID MAQQMEMAQI ICYGCRTLLM YTSGATNVRC SCCGTINMAR PANQNAYLNC GQCHTTLIYP
101: CGAPSVKCAI CHFVTNAGTM RVPIPEAQRP NETIPMRPST SAPPSEAQNM TVVVENPMSV NQSGKLVSNV VVGVTTGKK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.