CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43079	Soybean	extracellular	98.87	98.87
KRH37706	Soybean	mitochondrion	82.49	83.91
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	65.54	71.6
KRH12749	Soybean	extracellular	80.23	70.3
PGSC0003DMT400054616	Potato	extracellular	68.93	70.11
CDX98669	Canola	cytosol	73.45	68.06
Bra038804.1-P	Field mustard	cytosol	73.45	67.01
CDX94003	Canola	mitochondrion	72.88	66.84
CDX76459	Canola	cytosol	67.23	66.11
CDX78991	Canola	cytosol	71.19	65.97
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	71.19	64.95
Bra013460.1-P	Field mustard	cytosol	70.62	64.77
GSMUA_Achr7P00950_001	Banana	mitochondrion	64.97	64.25
Bra020924.1-P	Field mustard	cytosol	45.2	63.49
Os12t0611000-01	Rice	plastid	61.02	62.79
TraesCS5D01G059500.1	Wheat	mitochondrion	62.15	61.45
TraesCS5B01G054000.1	Wheat	mitochondrion	62.15	61.45
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	57.63	61.08
Os03t0639600-01	Rice	mitochondrion, plastid	63.84	60.75
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	59.89	60.57
GSMUA_Achr7P08020_001	Banana	mitochondrion	61.02	60.34
AT4G20380.8	Thale cress	extracellular	69.49	58.57
Zm00001d033262_P001	Maize	extracellular	62.71	58.42
TraesCS5B01G379800.1	Wheat	mitochondrion	59.32	58.33
TraesCS5A01G376200.1	Wheat	mitochondrion	59.32	58.33
TraesCS5D01G386200.2	Wheat	mitochondrion	59.32	58.01
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	62.71	56.35
GSMUA_Achr6P31340_001	Banana	cytosol	37.29	53.66
KRH04330	Soybean	plastid	44.63	52.67
KRH77212	Soybean	plastid	43.5	52.38
Os08t0130100-01	Rice	cytosol	42.94	51.7
OQU79832	Sorghum	mitochondrion	45.2	50.0
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	70.62	48.26
Zm00001d035195_P001	Maize	mitochondrion	40.11	47.33
HORVU7Hr1G074030.2	Barley	cytosol	34.46	46.21
TraesCS7A01G310500.1	Wheat	cytosol	34.46	46.21
CDY49490	Canola	plastid	62.71	46.06
Zm00001d049625_P001	Maize	plastid	30.51	45.76
HORVU5Hr1G093280.4	Barley	mitochondrion	59.32	45.65
KRH58208	Soybean	plastid	31.64	45.53
TraesCS7D01G307000.1	Wheat	cytosol	33.9	45.45
KXG23966	Sorghum	mitochondrion	63.84	43.3
KRH50040	Soybean	cytosol	28.81	39.84
Zm00001d041474_P001	Maize	mitochondrion	61.02	34.95

Protein Annotations

EMBL:ACUP02003304	EMBL:ACUP02003305	EMBL:BT096707	EnsemblPlants:KRH59208	EnsemblPlantsGene:GLYMA_05G171000	EntrezGene:100776394
InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	PFAM:PF06943	ProteinID:KRH59208	ProteinID:KRH59208.1
SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI000189D21B	UniProt:C6TGF7	MapMan:27.2.1	:

Description

hypothetical protein

Coordinates

chr5:+:36136021..36141901

Molecular Weight (calculated)

18725.7 Da

IEP (calculated)

8.551

GRAVY (calculated)

0.019

Length

177 amino acids

Sequence
(BLAST)

001: MQSQVVCNGC RSLLLYPRGA TNVCCALCNT ITSVPPPGME MSQLYCGGCR TLLMYTRGAT SVRCSCCHTV NLVPPASNQV AHVHCGNCRT TLMYPYGAPS
101: VKCALCHFIT NVSTNNGRLP IPVHRPNGTT NAGTLPTTST SMPQSQSQTV VVENPMSVDS SGKLVSNVVV GVTTDKK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.