Factsheet for HORVU5Hr1G093280.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G386200.2	Wheat	mitochondrion	76.52	97.24
TraesCS5A01G376200.1	Wheat	mitochondrion	74.78	95.56
TraesCS5B01G379800.1	Wheat	mitochondrion	74.35	95.0
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	60.43	79.43
Os03t0639600-01	Rice	mitochondrion, plastid	62.17	76.88
Zm00001d033262_P001	Maize	extracellular	54.78	66.32
GSMUA_Achr7P00950_001	Banana	mitochondrion	47.39	60.89
KRH43079	Soybean	extracellular	46.09	59.89
KRH59208	Soybean	extracellular	45.65	59.32
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	40.87	58.02
PGSC0003DMT400054616	Potato	extracellular	43.48	57.47
Bra020924.1-P	Field mustard	cytosol	30.0	54.76
KRH37706	Soybean	mitochondrion	40.43	53.45
CDX98669	Canola	cytosol	43.91	52.88
CDX76459	Canola	cytosol	41.3	52.78
Bra038804.1-P	Field mustard	cytosol	43.91	52.06
CDX94003	Canola	mitochondrion	43.48	51.81
CDX78991	Canola	cytosol	42.61	51.31
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	43.04	51.03
Bra013460.1-P	Field mustard	cytosol	42.61	50.78
AT4G20380.8	Thale cress	extracellular	44.35	48.57
KRH12749	Soybean	extracellular	41.3	47.03
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	33.48	46.11
HORVU7Hr1G074030.2	Barley	cytosol	25.65	44.7
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	46.96	41.7
CDY49490	Canola	plastid	41.74	39.83
HORVU1Hr1G073170.3	Barley	plastid	34.35	27.92

Protein Annotations

EMBL:EU545234	EnsemblPlants:HORVU5Hr1G093280.4	EnsemblPlantsGene:HORVU5Hr1G093280	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF13
PFAM:PF06943	ProteinID:ACB37311.1	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI000B46373B	UniProt:A0A287SA48
MapMan:27.2.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:591243832..591248132

Molecular Weight (calculated)

24358.5 Da

IEP (calculated)

9.397

GRAVY (calculated)

-0.192

Length

230 amino acids

Sequence
(BLAST)

001: SSFSPLPRRL RRRESPARPS QRPRSPLSRA GLSPEPPEGG DGRPVSSRAA SIAGMQSQIV CHRCRRVLAY PSGAPSVCCA MCRAITAVPP PAPVEMAQLI
101: CGGCRTLLMY TRNADTVRCS CCSTVNLVRP VNNIAHVNCG RCRTTLMYPH GAPSVKCAIC DFITNTGINA MSPAPCPRPT SNESAYNASS ASVPTSQPQN
201: VTVVVENPMT VDEKGKLVSN VVVGITPGKN

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.