Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G376200.1 | Wheat | mitochondrion | 99.44 | 99.44 |
| TraesCS5D01G386200.2 | Wheat | mitochondrion | 97.22 | 96.69 |
| EER91186 | Sorghum | extracellular, mitochondrion, peroxisome, plastid | 77.22 | 79.43 |
| Os03t0639600-01 | Rice | mitochondrion, plastid | 79.44 | 76.88 |
| HORVU5Hr1G093280.4 | Barley | mitochondrion | 95.0 | 74.35 |
| TraesCS5B01G054000.1 | Wheat | mitochondrion | 67.22 | 67.6 |
| Zm00001d033262_P001 | Maize | extracellular | 68.33 | 64.74 |
| GSMUA_Achr7P00950_001 | Banana | mitochondrion | 60.0 | 60.34 |
| KRH43079 | Soybean | extracellular | 58.89 | 59.89 |
| KRH59208 | Soybean | extracellular | 58.33 | 59.32 |
| Solyc02g069720.2.1 | Tomato | extracellular, mitochondrion | 52.78 | 58.64 |
| PGSC0003DMT400054616 | Potato | extracellular | 56.11 | 58.05 |
| KRH37706 | Soybean | mitochondrion | 53.33 | 55.17 |
| Bra020924.1-P | Field mustard | cytosol | 38.33 | 54.76 |
| CDX98669 | Canola | cytosol | 56.67 | 53.4 |
| CDX76459 | Canola | cytosol | 52.78 | 52.78 |
| Bra038804.1-P | Field mustard | cytosol | 56.11 | 52.06 |
| CDX94003 | Canola | mitochondrion | 55.56 | 51.81 |
| CDX78991 | Canola | cytosol | 53.89 | 50.79 |
| CDX82760 | Canola | cytosol, extracellular, mitochondrion, plastid | 54.44 | 50.52 |
| Bra013460.1-P | Field mustard | cytosol | 53.89 | 50.26 |
| TraesCS1B01G288600.3 | Wheat | plastid | 39.44 | 48.63 |
| AT4G20380.8 | Thale cress | extracellular | 56.11 | 48.1 |
| KRH12749 | Soybean | extracellular | 52.78 | 47.03 |
| CDY31440 | Canola | endoplasmic reticulum, extracellular, plastid | 42.22 | 45.51 |
| VIT_10s0092g00230.t01 | Wine grape | extracellular, plasma membrane | 57.22 | 39.77 |
| CDY49490 | Canola | plastid | 51.11 | 38.17 |
| TraesCS3B01G250000.3 | Wheat | nucleus | 8.33 | 1.72 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G379800.1 | EnsemblPlantsGene:TraesCS5B01G379800 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF13 | PFAM:PF06943 |
| SEG:seg | TIGRFAMs:TIGR01053 | MapMan:27.2.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:557902667..557906883
Molecular Weight (calculated)
19093.3 Da
IEP (calculated)
8.494
GRAVY (calculated)
0.044
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSQIVCHRC RRVLAYPSGA PSVCCAMCRA ITAVPPPAPA VEMAQLICGG CRTLLMYTRN ADTVRCSCCS TVNLVRPVNN IAHVNCGRCR TTLMYPHGAP
101: SVKCAICDYI TNITNTGINT MPPAPCPRPT SNESAYNASS ASVPTPQPQN VTVVVENPMT VDEKGKLVSN VVVGITPGKN
101: SVKCAICDYI TNITNTGINT MPPAPCPRPT SNESAYNASS ASVPTPQPQN VTVVVENPMT VDEKGKLVSN VVVGITPGKN
001: MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG ASSVRCSCCQ TTNLVPAHSN QVAHAPSSQV AQINCGHCRT
101: TLMYPYGASS VKCAVCQFVT NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT TDKK
101: TLMYPYGASS VKCAVCQFVT NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT TDKK
Arabidopsis Description
LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.