CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98669	Canola	cytosol	93.78	94.76
Bra038804.1-P	Field mustard	cytosol	91.19	90.72
CDX78991	Canola	cytosol	87.05	87.96
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	84.46	84.02
CDX76459	Canola	cytosol	75.13	80.56
KRH43079	Soybean	extracellular	67.36	73.45
KRH59208	Soybean	extracellular	66.84	72.88
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	62.18	71.86
AT4G20380.8	Thale cress	extracellular	76.68	70.48
PGSC0003DMT400054616	Potato	extracellular	61.14	67.82
KRH37706	Soybean	mitochondrion	60.62	67.24
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	55.96	66.67
Os12t0611000-01	Rice	plastid	54.4	61.05
GSMUA_Achr7P00950_001	Banana	mitochondrion	54.92	59.22
TraesCS5B01G054000.1	Wheat	mitochondrion	53.89	58.1
TraesCS5D01G059500.1	Wheat	mitochondrion	53.89	58.1
KRH12749	Soybean	extracellular	60.62	57.92
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	52.33	57.71
Os03t0639600-01	Rice	mitochondrion, plastid	55.44	57.53
GSMUA_Achr7P08020_001	Banana	mitochondrion	52.85	56.98
GSMUA_Achr6P31340_001	Banana	cytosol	36.27	56.91
Zm00001d033262_P001	Maize	extracellular	54.92	55.79
TraesCS5B01G379800.1	Wheat	mitochondrion	51.81	55.56
TraesCS5A01G376200.1	Wheat	mitochondrion	51.81	55.56
TraesCS5D01G386200.2	Wheat	mitochondrion	51.81	55.25
CDX73255	Canola	extracellular	25.39	53.26
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	53.89	52.79
CDY49490	Canola	plastid	64.25	51.45
Os08t0130100-01	Rice	cytosol	38.86	51.02
CDY26902	Canola	endoplasmic reticulum, extracellular	37.31	46.75
TraesCS7A01G310500.1	Wheat	cytosol	31.61	46.21
Zm00001d035195_P001	Maize	mitochondrion	35.75	46.0
OQU79832	Sorghum	mitochondrion	37.82	45.62
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	61.14	45.56
Zm00001d049625_P001	Maize	plastid	27.46	44.92
HORVU7Hr1G074030.2	Barley	cytosol	30.57	44.7
TraesCS7D01G307000.1	Wheat	cytosol	30.05	43.94
HORVU5Hr1G093280.4	Barley	mitochondrion	51.81	43.48
CDY01267	Canola	mitochondrion	15.54	41.1
KXG23966	Sorghum	mitochondrion	52.85	39.08
CDY68066	Canola	plastid	24.35	33.33
CDX76435	Canola	cytosol	26.42	33.12
Zm00001d041474_P001	Maize	mitochondrion	51.81	32.36
CDY31418	Canola	plastid	25.39	20.08

Protein Annotations

EnsemblPlants:CDX94003	EnsemblPlantsGene:GSBRNA2T00156882001	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	PFAM:PF06943
ProteinID:CDX94003	ProteinID:CDX94003.1	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI00000A38B9	MapMan:27.2.1

Description

BnaC07g36370D

Coordinates

chrLK031879:+:75236..76953

Molecular Weight (calculated)

20505.9 Da

IEP (calculated)

8.619

GRAVY (calculated)

-0.235

Length

193 amino acids

Sequence
(BLAST)

001: MQDQLMCHGC RNTLLYPRGA TNVRCALCNT INMVPLHPPP PPPHHAHAGM DMAHIVCGGC RTMLMYTRGA SSVRCSCCQT VNLVPATPPT NQPAHVNCGN
101: CRTTLMYPYG APSVRCAVCQ FVTNVNMGNG RVPFPTNQPN GTASSPGPMP STSTQSTPPS QTQTVVVENP MSVNESGKLV SNVVVGVTTD KKK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.