Factsheet for Zm00001d033262_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 2
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	78.42	85.14
Os03t0639600-01	Rice	mitochondrion, plastid	69.47	70.97
TraesCS5D01G386200.2	Wheat	mitochondrion	65.26	68.51
TraesCS5B01G379800.1	Wheat	mitochondrion	64.74	68.33
TraesCS5A01G376200.1	Wheat	mitochondrion	64.74	68.33
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	54.21	63.58
KRH43079	Soybean	extracellular	58.95	63.28
KRH59208	Soybean	extracellular	58.42	62.71
PGSC0003DMT400054616	Potato	extracellular	57.37	62.64
GSMUA_Achr7P00950_001	Banana	mitochondrion	58.42	62.01
KRH37706	Soybean	mitochondrion	52.63	57.47
Bra020924.1-P	Field mustard	cytosol	36.84	55.56
CDX98669	Canola	cytosol	55.26	54.97
CDX94003	Canola	mitochondrion	55.79	54.92
HORVU5Hr1G093280.4	Barley	mitochondrion	66.32	54.78
CDX78991	Canola	cytosol	54.21	53.93
Bra038804.1-P	Field mustard	cytosol	54.74	53.61
CDX76459	Canola	cytosol	50.53	53.33
Bra013460.1-P	Field mustard	cytosol	53.68	52.85
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	53.68	52.58
KRH12749	Soybean	extracellular	53.68	50.49
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	43.16	49.1
AT4G20380.8	Thale cress	extracellular	54.21	49.05
Zm00001d049625_P001	Maize	plastid	30.0	48.31
Zm00001d035195_P001	Maize	mitochondrion	36.32	46.0
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	57.37	42.08
CDY49490	Canola	plastid	52.63	41.49
Zm00001d041474_P001	Maize	mitochondrion	64.74	39.81
Zm00001d049525_P004	Maize	plastid	31.05	29.35
Zm00001d044463_P001	Maize	nucleus	24.74	5.3

Protein Annotations

EnsemblPlants:Zm00001d033262_P001	EnsemblPlants:Zm00001d033262_T001	EnsemblPlantsGene:Zm00001d033262	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF13
PFAM:PF06943	ProteinID:ONM07082.1	SEG:seg	TIGRFAMs:TIGR01053	UniParc:UPI000842A9EC	UniProt:A0A1D6KX97
MapMan:27.2.1	:	:	:	:	:

Description

Protein LSD1

Coordinates

chr1:+:256420827..256424829

Molecular Weight (calculated)

19899.3 Da

IEP (calculated)

8.434

GRAVY (calculated)

0.217

Length

190 amino acids

Sequence
(BLAST)

001: MLIRASLLFP LSIPGMQNQI MCHACRTLLL YPRGASSVCC AVCQAITTVP PPGLEMAQLI CGGCRTLLMY TRSADTVRCS CCNTVNLVRP VNNIAHVNCG
101: QCRTTLMYPY GAPSVKCAVC NYVTATGVNT VAPTPSARPT SDGSSYSGSS TSAPKSQSQN VTVVVENPMT VDDKGKLVSS VVVGVTAGKE

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.