Factsheet for Zm00001d035195_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049625_P001	Maize	plastid	64.67	82.2
OQU79832	Sorghum	mitochondrion	83.33	78.12
Os08t0130100-01	Rice	cytosol	66.0	67.35
HORVU7Hr1G074030.2	Barley	cytosol	53.33	60.61
TraesCS7D01G307000.1	Wheat	cytosol	52.67	59.85
TraesCS7A01G310500.1	Wheat	cytosol	52.67	59.85
Bra020924.1-P	Field mustard	cytosol	35.33	42.06
KRH59208	Soybean	extracellular	47.33	40.11
KRH43079	Soybean	extracellular	47.33	40.11
PGSC0003DMT400054616	Potato	extracellular	46.0	39.66
CDX76459	Canola	cytosol	46.67	38.89
GSMUA_Achr7P08020_001	Banana	mitochondrion	46.0	38.55
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	41.33	38.27
GSMUA_Achr6P31340_001	Banana	cytosol	30.67	37.4
KRH37706	Soybean	mitochondrion	43.33	37.36
Zm00001d033262_P001	Maize	extracellular	46.0	36.32
CDX98669	Canola	cytosol	46.0	36.13
CDX78991	Canola	cytosol	46.0	36.13
CDX94003	Canola	mitochondrion	46.0	35.75
Bra013460.1-P	Field mustard	cytosol	46.0	35.75
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	46.0	35.57
Bra038804.1-P	Field mustard	cytosol	46.0	35.57
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	38.67	34.73
AT4G20380.8	Thale cress	extracellular	46.0	32.86
KRH12749	Soybean	extracellular	44.0	32.67
CDY49490	Canola	plastid	45.33	28.22
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	48.0	27.8
Zm00001d041474_P001	Maize	mitochondrion	44.67	21.68
Zm00001d049525_P004	Maize	plastid	26.67	19.9
Zm00001d044463_P001	Maize	nucleus	20.67	3.49

Protein Annotations

EnsemblPlants:Zm00001d035195_P001	EnsemblPlants:Zm00001d035195_T001	EnsemblPlantsGene:Zm00001d035195	EntrezGene:107275235	InterPro:Znf_LSD1	PANTHER:PTHR31747
PANTHER:PTHR31747:SF5	PFAM:PF06943	ProteinID:AQK78508.1	TIGRFAMs:TIGR01053	UniParc:UPI000189D215	UniProt:A0A1D6LEY8
MapMan:27.2.1	:	:	:	:	:

Description

Protein LSD1

Coordinates

chr6:-:9103154..9104875

Molecular Weight (calculated)

15810.1 Da

IEP (calculated)

9.176

GRAVY (calculated)

-0.235

Length

150 amino acids

Sequence
(BLAST)

001: MHSHLACSGC KRLVQYRRGA AGVRCPSCDA FTAAANPSGP PEMSELVCGG CFTMLVHSRG AANVRCPHCG RLNSTRSGNQ MGHLSCGQCR TTLAYPPGAT
101: TVGCPTCRNV NPVRDARAAP QTVLVENPRT LDEKGKLVSN VAVGVASWKR

Best Arabidopsis Sequence Match ( AT4G20380.2 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.