CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020924.1-P	Field mustard	cytosol	62.87	83.33
CDX76459	Canola	cytosol	81.44	75.56
CDX98669	Canola	cytosol	72.46	63.35
CDX78991	Canola	cytosol	72.46	63.35
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	72.46	62.37
CDX94003	Canola	mitochondrion	71.86	62.18
KRH59208	Soybean	extracellular	61.08	57.63
KRH43079	Soybean	extracellular	60.48	57.06
KRH37706	Soybean	mitochondrion	56.29	54.02
AT4G20380.8	Thale cress	extracellular	67.07	53.33
PGSC0003DMT400054616	Potato	extracellular	53.89	51.72
GSMUA_Achr6P31340_001	Banana	cytosol	37.72	51.22
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	49.1	50.62
Os12t0611000-01	Rice	plastid	52.1	50.58
TraesCS5B01G054000.1	Wheat	mitochondrion	50.9	47.49
GSMUA_Achr7P08020_001	Banana	mitochondrion	50.9	47.49
TraesCS5D01G059500.1	Wheat	mitochondrion	50.9	47.49
KRH12749	Soybean	extracellular	56.89	47.03
GSMUA_Achr7P00950_001	Banana	mitochondrion	47.9	44.69
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	46.71	44.57
Os08t0130100-01	Rice	cytosol	38.92	44.22
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	51.5	43.65
HORVU7Hr1G074030.2	Barley	cytosol	34.13	43.18
TraesCS7A01G310500.1	Wheat	cytosol	34.13	43.18
Zm00001d033262_P001	Maize	extracellular	49.1	43.16
TraesCS5D01G386200.2	Wheat	mitochondrion	46.71	43.09
Os03t0639600-01	Rice	mitochondrion, plastid	47.31	42.47
TraesCS7D01G307000.1	Wheat	cytosol	33.53	42.42
CDX73255	Canola	extracellular	23.35	42.39
CDY49490	Canola	plastid	61.08	42.32
TraesCS5B01G379800.1	Wheat	mitochondrion	45.51	42.22
TraesCS5A01G376200.1	Wheat	mitochondrion	45.51	42.22
Zm00001d049625_P001	Maize	plastid	27.54	38.98
OQU79832	Sorghum	mitochondrion	37.13	38.75
Zm00001d035195_P001	Maize	mitochondrion	34.73	38.67
CDY01267	Canola	mitochondrion	16.17	36.99
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	56.29	36.29
CDY26902	Canola	endoplasmic reticulum, extracellular	32.34	35.06
HORVU5Hr1G093280.4	Barley	mitochondrion	46.11	33.48
KXG23966	Sorghum	mitochondrion	49.1	31.42
CDX76435	Canola	cytosol	23.95	25.97
Zm00001d041474_P001	Maize	mitochondrion	47.31	25.57
CDY68066	Canola	plastid	18.56	21.99
CDY31418	Canola	plastid	23.95	16.39

Protein Annotations

EnsemblPlants:CDY31440	EnsemblPlantsGene:GSBRNA2T00047677001	InterPro:Znf_LSD1	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	PFAM:PF06943
ProteinID:CDY31440	ProteinID:CDY31440.1	TIGRFAMs:TIGR01053	UniParc:UPI0004EE922A	UniProt:A0A078GY68	MapMan:27.2.1

Description

BnaC03g63840DBnaC03g63840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY68]

Coordinates

chrLK032272:-:189887..191349

Molecular Weight (calculated)

17894.9 Da

IEP (calculated)

8.628

GRAVY (calculated)

0.119

Length

167 amino acids

Sequence
(BLAST)

001: MMAEMQDQLV CHGCRNTLLY PRGATNGWTW LTLYVVVVEL CFMYTRGASS VRCSCCQTLN LVPAPTPSNQ FVHINCGNCR TTLMYPYGAS SVKCAVCQFV
101: TNVNLMGNGR VPNMPNGAAS PGTMLSTSTQ SIPPSKTQTV VVENPMSVNG SGKLVSNVVV GVTTCKK

Best Arabidopsis Sequence Match ( AT4G20380.1 )
(BLAST)

001: MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG ASSVRCSCCQ TTNLVPAHSN QVAHAPSSQV AQINCGHCRT
101: TLMYPYGASS VKCAVCQFVT NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT TDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.