Factsheet for Zm00001d041474_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0611000-01	Rice	plastid	41.75	75.0
TraesCS5D01G059500.1	Wheat	mitochondrion	43.37	74.86
TraesCS5B01G054000.1	Wheat	mitochondrion	43.37	74.86
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	44.98	70.56
Zm00001d033262_P001	Maize	extracellular	39.81	64.74
KRH59208	Soybean	extracellular	34.95	61.02
KRH43079	Soybean	extracellular	34.95	61.02
KXG23966	Sorghum	mitochondrion	51.13	60.54
GSMUA_Achr7P00950_001	Banana	mitochondrion	34.3	59.22
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	30.42	58.02
PGSC0003DMT400054616	Potato	extracellular	32.36	57.47
Bra020924.1-P	Field mustard	cytosol	22.65	55.56
KRH37706	Soybean	mitochondrion	30.42	54.02
CDX78991	Canola	cytosol	33.33	53.93
Bra013460.1-P	Field mustard	cytosol	33.01	52.85
CDX76459	Canola	cytosol	30.74	52.78
CDX82760	Canola	cytosol, extracellular, mitochondrion, plastid	33.01	52.58
CDX98669	Canola	cytosol	32.36	52.36
CDX94003	Canola	mitochondrion	32.36	51.81
Bra038804.1-P	Field mustard	cytosol	32.36	51.55
KRH12749	Soybean	extracellular	32.69	50.0
AT4G20380.8	Thale cress	extracellular	32.69	48.1
CDY31440	Canola	endoplasmic reticulum, extracellular, plastid	25.57	47.31
Zm00001d049625_P001	Maize	plastid	17.15	44.92
Zm00001d035195_P001	Maize	mitochondrion	21.68	44.67
CDY49490	Canola	plastid	31.72	40.66
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	33.66	40.15
Zm00001d049525_P004	Maize	plastid	18.45	28.36
Zm00001d044463_P001	Maize	nucleus	16.83	5.86

Protein Annotations

EMBL:BT036892	EnsemblPlants:Zm00001d041474_P001	EnsemblPlants:Zm00001d041474_T001	EnsemblPlantsGene:Zm00001d041474	EntrezGene:100194364	InterPro:Znf_LSD1
PANTHER:PTHR31747	PANTHER:PTHR31747:SF13	PFAM:PF06943	ProteinID:ONM33094.1	SEG:seg	TIGRFAMs:TIGR01053
UniParc:UPI00017B7297	UniProt:B4FIF4	MapMan:27.2.1	:	:	:

Description

Protein LSD1

Coordinates

chr3:-:122398912..122402298

Molecular Weight (calculated)

33167.8 Da

IEP (calculated)

8.699

GRAVY (calculated)

0.278

Length

309 amino acids

Sequence
(BLAST)

001: MFRCLAGWMR RVRRSVERSN RAGKLGRSVW GNRIAWMGFG IGREAGGCLF SPVPKLSVDD GDNRGRAKLI ECLADVGLGG ICWIANCSIW CTKNWTALGL
101: GLGLGWDCFA FDCVYAYYVL IRCGFGRNFA DMQSQIVCHG CRTLLFYPRG APSVCCAVCH VVTNVPPPAM EMARLICGGC QTLLMYARSA TTVRCSCCDT
201: VNLVRPVSSI AHVNCGQCQT VLMYPYGAPS VKCAVCNFIT NVGGVTPMIP LPPPALTASS GTSYIIPSIS VPTNQPRNVT VVVENPMTVD DKGKLVSNVV
301: VGVTSGGKK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.