Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- plasma membrane 5
- endoplasmic reticulum 3
- vacuole 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH43079 | Soybean | extracellular | 48.65 | 71.19 |
| KRH59208 | Soybean | extracellular | 48.26 | 70.62 |
| KRH37706 | Soybean | mitochondrion | 45.56 | 67.82 |
| PGSC0003DMT400054616 | Potato | extracellular | 44.79 | 66.67 |
| Solyc02g069720.2.1 | Tomato | extracellular, mitochondrion | 40.93 | 65.43 |
| CDX76459 | Canola | cytosol | 44.02 | 63.33 |
| GSMUA_Achr7P00950_001 | Banana | mitochondrion | 43.63 | 63.13 |
| GSMUA_Achr7P08020_001 | Banana | mitochondrion | 42.86 | 62.01 |
| Bra020924.1-P | Field mustard | cytosol | 30.12 | 61.9 |
| GSMUA_Achr6P31340_001 | Banana | cytosol | 29.34 | 61.79 |
| CDX98669 | Canola | cytosol | 45.17 | 61.26 |
| CDX94003 | Canola | mitochondrion | 45.56 | 61.14 |
| EER91186 | Sorghum | extracellular, mitochondrion, peroxisome, plastid | 40.93 | 60.57 |
| TraesCS5B01G054000.1 | Wheat | mitochondrion | 41.7 | 60.34 |
| TraesCS5D01G059500.1 | Wheat | mitochondrion | 41.7 | 60.34 |
| CDX78991 | Canola | cytosol | 44.4 | 60.21 |
| Bra038804.1-P | Field mustard | cytosol | 44.79 | 59.79 |
| Os12t0611000-01 | Rice | plastid | 39.38 | 59.3 |
| CDX82760 | Canola | cytosol, extracellular, mitochondrion, plastid | 44.4 | 59.28 |
| Bra013460.1-P | Field mustard | cytosol | 44.02 | 59.07 |
| KRH12749 | Soybean | extracellular | 45.95 | 58.91 |
| Os03t0639600-01 | Rice | mitochondrion, plastid | 41.7 | 58.06 |
| Zm00001d033262_P001 | Maize | extracellular | 42.08 | 57.37 |
| TraesCS5A01G376200.1 | Wheat | mitochondrion | 39.77 | 57.22 |
| TraesCS5B01G379800.1 | Wheat | mitochondrion | 39.77 | 57.22 |
| TraesCS5D01G386200.2 | Wheat | mitochondrion | 39.77 | 56.91 |
| CDY31440 | Canola | endoplasmic reticulum, extracellular, plastid | 36.29 | 56.29 |
| TraesCS5A01G048900.1 | Wheat | cytosol, mitochondrion | 42.47 | 55.84 |
| AT4G20380.8 | Thale cress | extracellular | 44.02 | 54.29 |
| Os08t0130100-01 | Rice | cytosol | 29.73 | 52.38 |
| Zm00001d035195_P001 | Maize | mitochondrion | 27.8 | 48.0 |
| OQU79832 | Sorghum | mitochondrion | 29.34 | 47.5 |
| HORVU7Hr1G074030.2 | Barley | cytosol | 23.94 | 46.97 |
| TraesCS7A01G310500.1 | Wheat | cytosol | 23.94 | 46.97 |
| HORVU5Hr1G093280.4 | Barley | mitochondrion | 41.7 | 46.96 |
| TraesCS7D01G307000.1 | Wheat | cytosol | 23.55 | 46.21 |
| CDY49490 | Canola | plastid | 42.08 | 45.23 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 32.82 | 44.5 |
| Zm00001d049625_P001 | Maize | plastid | 20.08 | 44.07 |
| KXG23966 | Sorghum | mitochondrion | 40.54 | 40.23 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 18.92 | 34.75 |
| Zm00001d041474_P001 | Maize | mitochondrion | 40.15 | 33.66 |
Protein Annotations
| MapMan:27.2.1 | ProteinID:CBI39012 | ProteinID:CBI39012.3 | UniProt:D7U8E8 | EMBL:FN596741 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:Multihaem_cyt_sf | PFAM:PF06943 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF3 |
| SUPFAM:SSF48695 | TIGR:TC58397 | TIGR:TC63196 | TIGRFAMs:TIGR01053 | TMHMM:TMhelix | UniParc:UPI0001BE4BB2 |
| ArrayExpress:VIT_10s0092g00230 | EnsemblPlantsGene:VIT_10s0092g00230 | EnsemblPlants:VIT_10s0092g00230.t01 | unigene:Vvi.493 | RefSeq:XP_002276731 | RefSeq:XP_002276731.2 |
| InterPro:Znf_LSD1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:11550592..11576391
Molecular Weight (calculated)
28410.6 Da
IEP (calculated)
9.010
GRAVY (calculated)
0.207
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFKCIYNFY LKILVHFDTK YFYLTILIIS FMILYLNFNA QYPFLNLQFS KSDSTKSTTF SHRIFAFNSS PFPFNCSSSE RKFSYQSAMQ SHLMCNGCRS
101: ILVYPRGATN VCCALCNSVT SVPPPGLEMA QLICGGCRTL LMYTRGATSV RCSCCHTVNL APAPSNQVAH VNCGNCRTTL MYPYGAPSVK CAVCHYVTSV
201: GMVNVRVPIP VHRPNAAAIS ASTPSTSSSQ TVVVKNPMSV DESGKLVSNV VVGVTTEKK
101: ILVYPRGATN VCCALCNSVT SVPPPGLEMA QLICGGCRTL LMYTRGATSV RCSCCHTVNL APAPSNQVAH VNCGNCRTTL MYPYGAPSVK CAVCHYVTSV
201: GMVNVRVPIP VHRPNAAAIS ASTPSTSSSQ TVVVKNPMSV DESGKLVSNV VVGVTTEKK
001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK
Arabidopsis Description
LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.