Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31440 | Canola | endoplasmic reticulum, extracellular, plastid | 83.33 | 62.87 |
| CDX76459 | Canola | cytosol | 87.3 | 61.11 |
| Bra013460.1-P | Field mustard | cytosol | 76.19 | 49.74 |
| GSMUA_Achr6P31340_001 | Banana | cytosol | 48.41 | 49.59 |
| Bra038804.1-P | Field mustard | cytosol | 75.4 | 48.97 |
| AT4G20380.8 | Thale cress | extracellular | 75.4 | 45.24 |
| KRH59208 | Soybean | extracellular | 63.49 | 45.2 |
| KRH43079 | Soybean | extracellular | 63.49 | 45.2 |
| TraesCS7A01G310500.1 | Wheat | cytosol | 46.03 | 43.94 |
| PGSC0003DMT400054616 | Potato | extracellular | 60.32 | 43.68 |
| Solyc02g069720.2.1 | Tomato | extracellular, mitochondrion | 55.56 | 43.21 |
| HORVU7Hr1G074030.2 | Barley | cytosol | 45.24 | 43.18 |
| Os12t0611000-01 | Rice | plastid | 58.73 | 43.02 |
| KRH37706 | Soybean | mitochondrion | 58.73 | 42.53 |
| TraesCS7D01G307000.1 | Wheat | cytosol | 44.44 | 42.42 |
| TraesCS5D01G059500.1 | Wheat | mitochondrion | 59.52 | 41.9 |
| TraesCS5B01G054000.1 | Wheat | mitochondrion | 59.52 | 41.9 |
| Zm00001d049625_P001 | Maize | plastid | 38.89 | 41.53 |
| Os08t0130100-01 | Rice | cytosol | 47.62 | 40.82 |
| GSMUA_Achr7P08020_001 | Banana | mitochondrion | 57.94 | 40.78 |
| GSMUA_Achr7P00950_001 | Banana | mitochondrion | 57.14 | 40.22 |
| EER91186 | Sorghum | extracellular, mitochondrion, peroxisome, plastid | 54.76 | 39.43 |
| Os03t0639600-01 | Rice | mitochondrion, plastid | 57.94 | 39.25 |
| TraesCS5A01G376200.1 | Wheat | mitochondrion | 54.76 | 38.33 |
| TraesCS5B01G379800.1 | Wheat | mitochondrion | 54.76 | 38.33 |
| TraesCS5D01G386200.2 | Wheat | mitochondrion | 54.76 | 38.12 |
| TraesCS5A01G048900.1 | Wheat | cytosol, mitochondrion | 59.52 | 38.07 |
| KRH12749 | Soybean | extracellular | 59.52 | 37.13 |
| Zm00001d033262_P001 | Maize | extracellular | 55.56 | 36.84 |
| Zm00001d035195_P001 | Maize | mitochondrion | 42.06 | 35.33 |
| OQU79832 | Sorghum | mitochondrion | 42.86 | 33.75 |
| VIT_10s0092g00230.t01 | Wine grape | extracellular, plasma membrane | 61.9 | 30.12 |
| HORVU5Hr1G093280.4 | Barley | mitochondrion | 54.76 | 30.0 |
| Bra010171.1-P | Field mustard | plastid | 34.13 | 27.39 |
| KXG23966 | Sorghum | mitochondrion | 55.56 | 26.82 |
| Zm00001d041474_P001 | Maize | mitochondrion | 55.56 | 22.65 |
| Bra020902.1-P | Field mustard | cytosol | 24.6 | 22.14 |
Protein Annotations
Description
AT4G20380 (E=2e-032) LSD1 | zinc finger protein (LSD1)
Coordinates
chrA08:+:11169644..11170294
Molecular Weight (calculated)
13473.3 Da
IEP (calculated)
9.031
GRAVY (calculated)
-0.152
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDQLVCHGC RNTLLYPRGA TNVRCALCNT VNQFAHINCG NCRTTLMYPY GASSVKCAVC QFVTNVNMGN RRVPNMPNGA ASPGTMSTQS TPPSKTQTVV
101: VENPMSVNES GKLVSNVVVG VTTCKK
101: VENPMSVNES GKLVSNVVVG VTTCKK
001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK
Arabidopsis Description
LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.