Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 2
- plastid 2
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 41.43 | 63.74 |
| KRH50040 | Soybean | cytosol | 55.71 | 60.94 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 52.14 | 51.77 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 56.43 | 50.97 |
| CDX76435 | Canola | cytosol | 54.29 | 49.35 |
| CDY31418 | Canola | plastid | 52.86 | 30.33 |
| Bra010171.1-P | Field mustard | plastid | 32.86 | 29.3 |
| Bra038804.1-P | Field mustard | cytosol | 35.71 | 25.77 |
| Bra013460.1-P | Field mustard | cytosol | 34.29 | 24.87 |
| Bra020924.1-P | Field mustard | cytosol | 22.14 | 24.6 |
| PGSC0003DMT400076422 | Potato | nucleus | 51.43 | 18.41 |
| Solyc02g078270.2.1 | Tomato | nucleus | 49.29 | 18.25 |
| Os01t0612700-01 | Rice | nucleus | 41.43 | 6.61 |
| KXG32887 | Sorghum | nucleus | 40.0 | 6.32 |
| Zm00001d044463_P001 | Maize | nucleus | 37.14 | 5.86 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 12.14 | 2.62 |
| TraesCS3D01G233000.2 | Wheat | nucleus | 15.71 | 2.44 |
| TraesCS3B01G250000.3 | Wheat | nucleus | 10.0 | 1.6 |
Protein Annotations
| EnsemblPlants:Bra020902.1 | EnsemblPlants:Bra020902.1-P | EnsemblPlantsGene:Bra020902 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009617 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF4 | PFAM:PF06943 | SEG:seg |
| TIGRFAMs:TIGR01053 | UniParc:UPI0002545A28 | UniProt:M4DWK8 | MapMan:27.2.1 | : | : |
Description
AT4G21610 (E=3e-052) LOL2 | LOL2 (LSD ONE LIKE 2); transcription factor
Coordinates
chrA08:-:11316362..11317503
Molecular Weight (calculated)
15509.6 Da
IEP (calculated)
4.976
GRAVY (calculated)
-0.454
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIQTQKKE EEEDEEEGPP PGWESTVLPP PPTPISAVTT AAEISEMAQM VCGSCRRLLS YPRGTKHVKC SCCQTVNLVL EAYQVGQVKC SNCELLLMYP
101: YGAPSVRCSS CKSVTDIRED NKRPPWSVLQ GPLKTFSSVR
101: YGAPSVRCSS CKSVTDIRED NKRPPWSVLQ GPLKTFSSVR
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.