Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 43.97 | 68.13 |
| KRH50040 | Soybean | cytosol | 53.9 | 59.38 |
| Bra020902.1-P | Field mustard | cytosol | 51.77 | 52.14 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 48.23 | 43.87 |
| CDX76435 | Canola | cytosol | 47.52 | 43.51 |
| CDY31418 | Canola | plastid | 46.1 | 26.64 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 35.46 | 26.18 |
| VIT_10s0092g00230.t01 | Wine grape | extracellular, plasma membrane | 34.75 | 18.92 |
| PGSC0003DMT400076422 | Potato | nucleus | 51.77 | 18.67 |
| Solyc02g078270.2.1 | Tomato | nucleus | 49.65 | 18.52 |
| Os01t0612700-01 | Rice | nucleus | 41.84 | 6.72 |
| KXG32887 | Sorghum | nucleus | 39.01 | 6.21 |
| Zm00001d044463_P001 | Maize | nucleus | 39.01 | 6.2 |
| TraesCS3D01G233000.2 | Wheat | nucleus | 15.6 | 2.44 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 9.93 | 2.16 |
| TraesCS3B01G250000.3 | Wheat | nucleus | 9.93 | 1.6 |
Protein Annotations
| EntrezGene:100265410 | wikigene:100265410 | MapMan:27.2.1 | ProteinID:CBI23324 | ProteinID:CBI23324.3 | UniProt:E0CVZ1 |
| EMBL:FN595252 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009617 | EntrezGene:LOC100265410 |
| wikigene:LOC100265410 | PFAM:PF06943 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF4 | TIGRFAMs:TIGR01053 | UniParc:UPI0001986388 |
| ArrayExpress:VIT_00s0181g00230 | EnsemblPlantsGene:VIT_00s0181g00230 | EnsemblPlants:VIT_00s0181g00230.t01 | unigene:Vvi.21289 | RefSeq:XP_002273964 | RefSeq:XP_002273964.1 |
| InterPro:Znf_LSD1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:7923216..7927658
Molecular Weight (calculated)
15369.2 Da
IEP (calculated)
7.699
GRAVY (calculated)
-0.457
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: METEAETTGS RQEGLSPNHS AGNGKDARRD GETVAPTTTL KQPSEMAQMV CGSCRRLLSY PQGTRHVECS CCQTVNFVLE AHQVGQVKCG SCAVLLMYPY
101: GAPSVRCSSC RFVTEIGVHN RRLPLSVQQG HQLPLHSYTD N
101: GAPSVRCSSC RFVTEIGVHN RRLPLSVQQG HQLPLHSYTD N
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.