Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076422 | Potato | nucleus | 72.22 | 69.82 |
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 16.4 | 68.13 |
| KRH50040 | Soybean | cytosol | 18.52 | 54.69 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 18.52 | 49.65 |
| Bra020902.1-P | Field mustard | cytosol | 18.25 | 49.29 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 19.31 | 47.1 |
| CDX76435 | Canola | cytosol | 18.52 | 45.45 |
| Solyc08g077060.2.1 | Tomato | plastid | 12.7 | 33.1 |
| CDY31418 | Canola | plastid | 18.25 | 28.28 |
| Solyc02g069720.2.1 | Tomato | extracellular, mitochondrion | 11.64 | 27.16 |
| Os01t0612700-01 | Rice | nucleus | 21.69 | 9.34 |
| KXG32887 | Sorghum | nucleus | 18.78 | 8.01 |
| Zm00001d044463_P001 | Maize | nucleus | 17.46 | 7.44 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 8.73 | 5.08 |
| TraesCS3D01G233000.2 | Wheat | nucleus | 11.11 | 4.65 |
| TraesCS3B01G250000.3 | Wheat | nucleus | 9.79 | 4.24 |
Protein Annotations
| EnsemblPlants:Solyc02g078270.2.1 | EnsemblPlantsGene:Solyc02g078270.2 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF4 | PFAM:PF06943 |
| SEG:seg | TIGRFAMs:TIGR01053 | UniParc:UPI00027680D8 | UniProt:K4B951 | MapMan:27.2.1 | : |
Description
No Description!
Coordinates
chr2:+:43014270..43020134
Molecular Weight (calculated)
41311.2 Da
IEP (calculated)
4.334
GRAVY (calculated)
-0.825
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKLSHIEN QQLDDDEEED EGPPPGFDSL AVPSQNTNVV IDEDDDEGPP PGWPSIPQQH NLQTTDVEMG SKEHKSEDDE DGPPPGWNTV ISQKKSPSSP
101: PTLEAVICDI EMEKKEEIIK NEDNGPPPIW QLTPKLPALQ TSTPPSWTQG ASLEDIEMEK KEEAVEDEDN GPPPGWQLTP QLLPLQTSTP PSGIQGAPLA
201: DVEMASNQDC DVEKEGHPLG SPTPPLQSSS PVASSEMDMG RKQEGTKNEE ERPPSEKQPM SHLVQMKPIV PQASSHAATV SSELGQMVCG GCQQLLSYSQ
301: GAKLVKCSCC QTVNLVLEAH EVGQVKCGGC AVLLMYPYGA PSVRCSSCRH MTKIWAHNRR PPQSVQQPRR RHPSYQVH
101: PTLEAVICDI EMEKKEEIIK NEDNGPPPIW QLTPKLPALQ TSTPPSWTQG ASLEDIEMEK KEEAVEDEDN GPPPGWQLTP QLLPLQTSTP PSGIQGAPLA
201: DVEMASNQDC DVEKEGHPLG SPTPPLQSSS PVASSEMDMG RKQEGTKNEE ERPPSEKQPM SHLVQMKPIV PQASSHAATV SSELGQMVCG GCQQLLSYSQ
301: GAKLVKCSCC QTVNLVLEAH EVGQVKCGGC AVLLMYPYGA PSVRCSSCRH MTKIWAHNRR PPQSVQQPRR RHPSYQVH
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.