Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 2
- nucleus 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 48.44 | 68.13 |
| Bra020902.1-P | Field mustard | cytosol | 60.94 | 55.71 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 59.38 | 53.9 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 51.56 | 42.58 |
| CDX76435 | Canola | cytosol | 47.66 | 39.61 |
| KRH77212 | Soybean | plastid | 39.06 | 34.01 |
| KRH04330 | Soybean | plastid | 39.06 | 33.33 |
| KRH59208 | Soybean | extracellular | 39.84 | 28.81 |
| KRH43079 | Soybean | extracellular | 39.84 | 28.81 |
| KRH37706 | Soybean | mitochondrion | 36.72 | 27.01 |
| KRH58208 | Soybean | plastid | 24.22 | 25.2 |
| CDY31418 | Canola | plastid | 46.88 | 24.59 |
| KRH12749 | Soybean | extracellular | 35.16 | 22.28 |
| PGSC0003DMT400076422 | Potato | nucleus | 57.03 | 18.67 |
| Solyc02g078270.2.1 | Tomato | nucleus | 54.69 | 18.52 |
| Os01t0612700-01 | Rice | nucleus | 47.66 | 6.95 |
| KXG32887 | Sorghum | nucleus | 43.75 | 6.32 |
| Zm00001d044463_P001 | Maize | nucleus | 42.19 | 6.09 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 14.84 | 2.93 |
| TraesCS3D01G233000.2 | Wheat | nucleus | 17.19 | 2.44 |
| TraesCS3B01G250000.3 | Wheat | nucleus | 12.5 | 1.83 |
Protein Annotations
| EMBL:ACUP02004653 | EnsemblPlants:KRH50040 | EnsemblPlantsGene:GLYMA_07G196200 | EntrezGene:100780865 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 |
| PANTHER:PTHR31747:SF4 | PFAM:PF06943 | ProteinID:KRH50038.1 | ProteinID:KRH50039.1 | ProteinID:KRH50040 | ProteinID:KRH50040.1 |
| SEG:seg | TIGRFAMs:TIGR01053 | UniParc:UPI000189D217 | UniProt:A0A0R0J664 | MapMan:27.2.1 | : |
Description
hypothetical protein
Coordinates
chr7:-:36467287..36473338
Molecular Weight (calculated)
13990.9 Da
IEP (calculated)
8.724
GRAVY (calculated)
-0.575
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSQQTVKEE DDEGPPPGWQ PLPAQPPPPP RPSGWAQMVC GSCRRLLSYP RGAKHVKCSC CQTVNIVLEA DQVGQVKCGS CAVLLMYPYG ASQVRCSSCR
101: FVTEIGAHNK RPPWSVQQRK PSPPKTGC
101: FVTEIGAHNK RPPWSVQQRK PSPPKTGC
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.