Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- plastid 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G32540.1 | KRG90619 | AT5G08330.1 | 21798944 |
| AT1G32540.1 | KRH36141 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04330 | Soybean | plastid | 78.86 | 64.67 |
| Solyc08g077060.2.1 | Tomato | plastid | 73.17 | 62.07 |
| KRH77212 | Soybean | plastid | 73.17 | 61.22 |
| PGSC0003DMT400045143 | Potato | plastid | 73.17 | 59.21 |
| GSMUA_Achr7P04710_001 | Banana | plastid | 67.48 | 58.87 |
| CDY68066 | Canola | plastid | 67.48 | 58.87 |
| TraesCS1D01G278800.2 | Wheat | plastid | 69.11 | 58.22 |
| TraesCS1B01G288600.3 | Wheat | plastid | 69.11 | 58.22 |
| TraesCS1A01G279500.3 | Wheat | plastid | 69.11 | 58.22 |
| EES14592 | Sorghum | plastid | 67.48 | 58.04 |
| Bra010171.1-P | Field mustard | plastid | 73.17 | 57.32 |
| GSMUA_AchrUn_... | Banana | plastid | 62.6 | 51.33 |
| Os08t0159500-01 | Rice | nucleus | 68.29 | 45.65 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 70.73 | 45.55 |
| AT1G32540.1 | Thale cress | extracellular | 63.41 | 41.71 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 69.11 | 41.06 |
| KRH43079 | Soybean | extracellular | 45.53 | 31.64 |
| KRH59208 | Soybean | extracellular | 45.53 | 31.64 |
| KRH37706 | Soybean | mitochondrion | 44.72 | 31.61 |
| HORVU1Hr1G073170.3 | Barley | plastid | 69.92 | 30.39 |
| KRH12749 | Soybean | extracellular | 45.53 | 27.72 |
| KRH50040 | Soybean | cytosol | 25.2 | 24.22 |
| Zm00001d049525_P004 | Maize | plastid | 35.77 | 21.89 |
Protein Annotations
| EMBL:ACUP02003232 | EnsemblPlants:KRH58208 | EnsemblPlantsGene:GLYMA_05G112200 | InterPro:Znf_LSD1 | PFAM:PF06943 | ProteinID:KRH58208 |
| ProteinID:KRH58208.1 | SEG:seg | TIGRFAMs:TIGR01053 | UniParc:UPI0006EDB0A7 | UniProt:A0A0R0JTR3 | MapMan:27.2.1 |
Description
hypothetical protein
Coordinates
chr5:-:29799553..29802571
Molecular Weight (calculated)
12890.2 Da
IEP (calculated)
7.476
GRAVY (calculated)
0.724
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFPLAPYPT PPAPYTPPAN GVQSQLVCSG CRNLLVFPVG ATSVCCAVCN AVTAVPPPGT EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEGIVL
101: LIVSLRFKEL CCVCAHACMM DRL
101: LIVSLRFKEL CCVCAHACMM DRL
001: MPVPLAPYPT PPAPALAPSY NTPPANGSTS GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV
101: NLALEGLHAY
101: NLALEGLHAY
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.