Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- plastid 4
- cytosol 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58208 | Soybean | plastid | 58.87 | 67.48 |
| Solyc08g077060.2.1 | Tomato | plastid | 58.16 | 56.55 |
| GSMUA_Achr7P04710_001 | Banana | plastid | 55.32 | 55.32 |
| PGSC0003DMT400045143 | Potato | plastid | 59.57 | 55.26 |
| CDY26902 | Canola | endoplasmic reticulum, extracellular | 53.9 | 49.35 |
| GSMUA_AchrUn_... | Banana | plastid | 51.06 | 48.0 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 57.45 | 42.41 |
| CDX73255 | Canola | extracellular | 25.53 | 39.13 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 55.32 | 37.68 |
| CDX78991 | Canola | cytosol | 34.75 | 25.65 |
| CDX76459 | Canola | cytosol | 32.62 | 25.56 |
| CDX82760 | Canola | cytosol, extracellular, mitochondrion, plastid | 34.75 | 25.26 |
| CDX98669 | Canola | cytosol | 34.04 | 25.13 |
| CDX94003 | Canola | mitochondrion | 33.33 | 24.35 |
| CDX76435 | Canola | cytosol | 22.7 | 20.78 |
| CDY49490 | Canola | plastid | 34.04 | 19.92 |
| CDY31440 | Canola | endoplasmic reticulum, extracellular, plastid | 21.99 | 18.56 |
| CDY31418 | Canola | plastid | 21.28 | 12.3 |
| CDY01267 | Canola | mitochondrion | 2.13 | 4.11 |
Protein Annotations
| EnsemblPlants:CDY68066 | EnsemblPlantsGene:GSBRNA2T00069183001 | InterPro:Znf_LSD1 | PFAM:PF06943 | ProteinID:CDY68066 | ProteinID:CDY68066.1 |
| SEG:seg | TIGRFAMs:TIGR01053 | TMHMM:TMhelix | UniParc:UPI0004EE631A | UniProt:A0A078JQV7 | MapMan:27.2.1 |
Description
BnaC05g51440DBnaC05g51440D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JQV7]
Coordinates
chrLK036813:+:6417..7222
Molecular Weight (calculated)
15110.7 Da
IEP (calculated)
8.000
GRAVY (calculated)
0.504
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLPLAPYPT PPAPALSPSY TPPPLANGST GGQSQLVCSG CRNLLMYPVG ASSVCCAVCN AVTAVPPPGT EMARLVCGGC HTLLMYIRGA TSVQCSCCHT
101: VNLALEGLHL IYKHLHTCIY IHVKSLCSNI YIYIYIYIYI Y
101: VNLALEGLHL IYKHLHTCIY IHVKSLCSNI YIYIYIYIYI Y
001: MPVPLAPYPT PPAPALAPSY NTPPANGSTS GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV
101: NLALEGLHAY
101: NLALEGLHAY
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.