Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY44770 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G32540.1 | CDY44770 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73255 | Canola | extracellular | 46.1 | 77.17 |
| Bra010171.1-P | Field mustard | plastid | 74.68 | 73.25 |
| AT1G32540.1 | Thale cress | extracellular | 77.27 | 63.64 |
| CDY01267 | Canola | mitochondrion | 25.97 | 54.79 |
| CDY68066 | Canola | plastid | 49.35 | 53.9 |
| CDX76459 | Canola | cytosol | 45.45 | 38.89 |
| CDX78991 | Canola | cytosol | 48.05 | 38.74 |
| CDX98669 | Canola | cytosol | 47.4 | 38.22 |
| CDX82760 | Canola | cytosol, extracellular, mitochondrion, plastid | 48.05 | 38.14 |
| CDX94003 | Canola | mitochondrion | 46.75 | 37.31 |
| CDY31440 | Canola | endoplasmic reticulum, extracellular, plastid | 35.06 | 32.34 |
| CDX76435 | Canola | cytosol | 31.17 | 31.17 |
| CDY49490 | Canola | plastid | 45.45 | 29.05 |
| CDY31418 | Canola | plastid | 29.87 | 18.85 |
Protein Annotations
| EnsemblPlants:CDY26902 | EnsemblPlantsGene:GSBRNA2T00036606001 | InterPro:Multihaem_cyt_sf | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF1 |
| PFAM:PF06943 | ProteinID:CDY26902 | ProteinID:CDY26902.1 | SEG:seg | SUPFAM:SSF48695 | TIGRFAMs:TIGR01053 |
| UniParc:UPI0004EE849A | UniProt:A0A078GP00 | MapMan:27.2.1 | : | : | : |
Description
BnaA05g18100DBnaA05g18100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP00]
Coordinates
chrLK032196:+:44588..49185
Molecular Weight (calculated)
16382.1 Da
IEP (calculated)
8.079
GRAVY (calculated)
0.452
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MLINEKSHFH ISFVLFSFFT MNLRFIGSTG GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV
101: NLALEANQVA HVNCGSCKML LMYQYGARSV KCAVCSFITS VGGSTSTTDQ KLNN
101: NLALEANQVA HVNCGSCKML LMYQYGARSV KCAVCSFITS VGGSTSTTDQ KLNN
001: MHTWKNQIFS DSQFVLLFMG KNCSIIFPEP HLFISHVFII HLNVLFLVKK INKNNLRFVG STSGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN
101: GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST TDSKFNN
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.