Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 2
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76435 | Canola | cytosol | 54.51 | 86.36 |
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 20.49 | 54.95 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 34.02 | 53.55 |
| Bra020902.1-P | Field mustard | cytosol | 30.33 | 52.86 |
| KRH50040 | Soybean | cytosol | 24.59 | 46.88 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 26.64 | 46.1 |
| CDX73255 | Canola | extracellular | 16.8 | 44.57 |
| CDY01267 | Canola | mitochondrion | 9.02 | 30.14 |
| CDY26902 | Canola | endoplasmic reticulum, extracellular | 18.85 | 29.87 |
| CDX98669 | Canola | cytosol | 20.08 | 25.65 |
| CDX76459 | Canola | cytosol | 18.85 | 25.56 |
| CDX94003 | Canola | mitochondrion | 20.08 | 25.39 |
| CDX78991 | Canola | cytosol | 19.26 | 24.61 |
| CDX82760 | Canola | cytosol, extracellular, mitochondrion, plastid | 19.26 | 24.23 |
| CDY31440 | Canola | endoplasmic reticulum, extracellular, plastid | 16.39 | 23.95 |
| CDY68066 | Canola | plastid | 12.3 | 21.28 |
| CDY49490 | Canola | plastid | 18.85 | 19.09 |
| PGSC0003DMT400076422 | Potato | nucleus | 29.51 | 18.41 |
| Solyc02g078270.2.1 | Tomato | nucleus | 28.28 | 18.25 |
| Zm00001d044463_P001 | Maize | nucleus | 22.95 | 6.31 |
| KXG32887 | Sorghum | nucleus | 22.54 | 6.21 |
| Os01t0612700-01 | Rice | nucleus | 21.31 | 5.92 |
| TraesCS3D01G233000.2 | Wheat | nucleus | 9.84 | 2.66 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 6.56 | 2.47 |
| TraesCS3B01G250000.3 | Wheat | nucleus | 6.97 | 1.95 |
Protein Annotations
| EnsemblPlants:CDY31418 | EnsemblPlantsGene:GSBRNA2T00047645001 | InterPro:Znf_LSD1 | ncoils:Coil | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF4 |
| PFAM:PF06943 | ProteinID:CDY31418 | ProteinID:CDY31418.1 | SEG:seg | TIGRFAMs:TIGR01053 | UniParc:UPI0004EEFB09 |
| UniProt:A0A078H3K3 | MapMan:27.2.1 | : | : | : | : |
Description
BnaC03g64060DBnaC03g64060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3K3]
Coordinates
chrLK032272:+:6903..12043
Molecular Weight (calculated)
27241.9 Da
IEP (calculated)
7.918
GRAVY (calculated)
-0.322
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRHGVSVSP SPKLGFGRDK LNGTYKPVFL YNSYGFGLDN VTTCSVRLKI EPKTKEEKIE CPVLVYRNQC HIPVCLVFIS GEFSHLCKRV MIAEAETKDM
101: MEEIQSQKKE EDEDEEEGPP PGWESTVLPP PPISAAEISG IFNQSVFRGS MAQMVCGSCR RLLSYPRGTK HVKCSCCQTV NLVLEAYQVG QVKCSNCELL
201: LMYPYGAPSV RCSSCKSVTD IREDNKRPPW SVLQGPLKTF SSVR
101: MEEIQSQKKE EDEDEEEGPP PGWESTVLPP PPISAAEISG IFNQSVFRGS MAQMVCGSCR RLLSYPRGTK HVKCSCCQTV NLVLEAYQVG QVKCSNCELL
201: LMYPYGAPSV RCSSCKSVTD IREDNKRPPW SVLQGPLKTF SSVR
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.