Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 5
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH50040 | Soybean | cytosol | 68.13 | 48.44 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 68.13 | 43.97 |
| Bra020902.1-P | Field mustard | cytosol | 63.74 | 41.43 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 61.54 | 36.13 |
| CDX76435 | Canola | cytosol | 54.95 | 32.47 |
| GSMUA_Achr7P04710_001 | Banana | plastid | 46.15 | 29.79 |
| GSMUA_AchrUn_... | Banana | plastid | 45.05 | 27.33 |
| GSMUA_Achr6P31340_001 | Banana | cytosol | 30.77 | 22.76 |
| GSMUA_Achr7P00950_001 | Banana | mitochondrion | 40.66 | 20.67 |
| CDY31418 | Canola | plastid | 54.95 | 20.49 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 46.15 | 20.29 |
| GSMUA_Achr7P08020_001 | Banana | mitochondrion | 36.26 | 18.44 |
| PGSC0003DMT400076422 | Potato | nucleus | 71.43 | 16.62 |
| Solyc02g078270.2.1 | Tomato | nucleus | 68.13 | 16.4 |
| Os01t0612700-01 | Rice | nucleus | 57.14 | 5.92 |
| KXG32887 | Sorghum | nucleus | 56.04 | 5.76 |
| Zm00001d044463_P001 | Maize | nucleus | 51.65 | 5.3 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 14.29 | 2.0 |
| TraesCS3D01G233000.2 | Wheat | nucleus | 15.38 | 1.55 |
| TraesCS3B01G250000.3 | Wheat | nucleus | 7.69 | 0.8 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P24410_001 | EnsemblPlants:GSMUA_Achr7T24410_001 | EnsemblPlantsGene:GSMUA_Achr7G24410_001 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009617 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF4 | PFAM:PF06943 | TIGRFAMs:TIGR01053 |
| UniParc:UPI0002957536 | UniProt:M0TKC7 | MapMan:27.2.1 | : | : | : |
Description
retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G24410_001]
Coordinates
chr7:-:26368241..26372254
Molecular Weight (calculated)
9776.0 Da
IEP (calculated)
8.419
GRAVY (calculated)
0.057
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MVCGGCRQLL SYPRNASYVQ CASCQTVNLV LEAHQVGNVK CGRCSVLLMY PYGAPSVRCS SCCFITKIGE HNVRPPLSVQ QGQPPTGNPV C
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.