Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G250000.3 | Wheat | nucleus | 85.38 | 88.32 |
| TraesCS3A01G219500.1 | Wheat | nucleus | 40.2 | 55.93 |
| Os01t0612700-01 | Rice | nucleus | 22.15 | 22.78 |
| KRH50040 | Soybean | cytosol | 2.44 | 17.19 |
| Bra020902.1-P | Field mustard | cytosol | 2.44 | 15.71 |
| VIT_00s0181g00230.t01 | Wine grape | cytosol | 2.44 | 15.6 |
| KXG32887 | Sorghum | nucleus | 15.17 | 15.46 |
| GSMUA_Achr7P24410_001 | Banana | mitochondrion | 1.55 | 15.38 |
| TraesCS1D01G278800.2 | Wheat | plastid | 2.44 | 15.07 |
| Zm00001d044463_P001 | Maize | nucleus | 13.07 | 13.3 |
| AT4G21610.1 | Thale cress | cytosol, nucleus, plastid | 2.21 | 12.9 |
| TraesCS5D01G059500.1 | Wheat | mitochondrion | 2.33 | 11.73 |
| CDX76435 | Canola | cytosol | 1.99 | 11.69 |
| TraesCS5D01G386200.2 | Wheat | mitochondrion | 2.33 | 11.6 |
| Solyc02g078270.2.1 | Tomato | nucleus | 4.65 | 11.11 |
| PGSC0003DMT400076422 | Potato | nucleus | 4.54 | 10.49 |
| CDY31418 | Canola | plastid | 2.66 | 9.84 |
| TraesCS7D01G307000.1 | Wheat | cytosol | 1.22 | 8.33 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G233000.2 | EnsemblPlantsGene:TraesCS3D01G233000 | InterPro:Znf_LSD1 | PANTHER:PTHR31747 | PANTHER:PTHR31747:SF4 | PFAM:PF06943 |
| SEG:seg | TIGRFAMs:TIGR01053 | MapMan:27.2.1 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:320836281..320840723
Molecular Weight (calculated)
94136.0 Da
IEP (calculated)
4.118
GRAVY (calculated)
-0.210
Length
903 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSSPEIGPP SENKPMISPP PFPSVPPPQE TPQPTTADPL EPAQSDHAES TPPPHPGVTA TSPEAYESTV SAPAHIDGKK REAGRPPSLS ASPALEATKL
101: EQHASPLPPP AAEAFPEAAT TEASPSPSHQ IVAASVAETP SPPTPSSPPA STAGALSDGS LADSAAMVSE EAGRLPAALE SMDANLPTAP APLTLPLKSE
201: PEGLLPQQHR RPPWPTVLPG CENFEHSQPP SPRPPQVEAA HGLPDAAQTN AIAVTSEEPG APSACKSDSE GSFEVAMHIP LSSPTEAEPC SPDVAPPGFE
301: KFKFSWPPLP PPNLSVETAH SLLNPAVPEG VANPVPVLET MDTKAVAALN LPLPSSESGA EEPLWQPLLR SPSTITQAEP CSPDMPPPGF ENFKLSCMPL
401: SNENTYASSD VIATKAVAVT PEEAVLPVPT LEAIDVETDS ACNLLPPLGS KLEGLLKQPL LRSTTPVAES PPCSPQIAPP GFESFRSSWQ PLSTPPSGTA
501: FIMPDAAVMP LPVTLEEAAG SPPALEAMDV DMNAIHPLTV PLESGVEGSL QEPQPRPPSP ISQDVPSSPD MAPPGFENFK SSQLLLPSPV FSQTAYTLHD
601: STTTIAEYVL EEAAQLSPAL ETIDVKMETS PESGAEGSLP QQMHWRPSPK ENSTACSPEM VPSGHENLQP LPYPAFLPQA QTPDVVATGA VIGALDQMHH
701: PAPVLGTIEE GTSPILSPPL ESGSLPQLEP QMNSVTAHVV DTPMHVPATD CVAVNSEGTV LPLPALQAMV TNMDSATTSL PRFENGAEGS LPQLRQQSSS
801: PNVQAAPCSL DAVELLPPPP PPFVNKEVGQ MVCGSCRELI AYPRGAVHVQ CAACRTVNLV VEAHEVGNVH CGRCEILLMY PFGAPAVKCS LCLFVTEIGV
901: SEL
101: EQHASPLPPP AAEAFPEAAT TEASPSPSHQ IVAASVAETP SPPTPSSPPA STAGALSDGS LADSAAMVSE EAGRLPAALE SMDANLPTAP APLTLPLKSE
201: PEGLLPQQHR RPPWPTVLPG CENFEHSQPP SPRPPQVEAA HGLPDAAQTN AIAVTSEEPG APSACKSDSE GSFEVAMHIP LSSPTEAEPC SPDVAPPGFE
301: KFKFSWPPLP PPNLSVETAH SLLNPAVPEG VANPVPVLET MDTKAVAALN LPLPSSESGA EEPLWQPLLR SPSTITQAEP CSPDMPPPGF ENFKLSCMPL
401: SNENTYASSD VIATKAVAVT PEEAVLPVPT LEAIDVETDS ACNLLPPLGS KLEGLLKQPL LRSTTPVAES PPCSPQIAPP GFESFRSSWQ PLSTPPSGTA
501: FIMPDAAVMP LPVTLEEAAG SPPALEAMDV DMNAIHPLTV PLESGVEGSL QEPQPRPPSP ISQDVPSSPD MAPPGFENFK SSQLLLPSPV FSQTAYTLHD
601: STTTIAEYVL EEAAQLSPAL ETIDVKMETS PESGAEGSLP QQMHWRPSPK ENSTACSPEM VPSGHENLQP LPYPAFLPQA QTPDVVATGA VIGALDQMHH
701: PAPVLGTIEE GTSPILSPPL ESGSLPQLEP QMNSVTAHVV DTPMHVPATD CVAVNSEGTV LPLPALQAMV TNMDSATTSL PRFENGAEGS LPQLRQQSSS
801: PNVQAAPCSL DAVELLPPPP PPFVNKEVGQ MVCGSCRELI AYPRGAVHVQ CAACRTVNLV VEAHEVGNVH CGRCEILLMY PFGAPAVKCS LCLFVTEIGV
901: SEL
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN
Arabidopsis Description
LOL2Protein LOL2 [Source:UniProtKB/Swiss-Prot;Acc:O65426]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.