Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- plastid 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400042166 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G32540.1 | PGSC0003DMT400042166 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g077060.2.1 | Tomato | plastid | 86.18 | 90.34 |
| EES14592 | Sorghum | plastid | 80.26 | 85.31 |
| KRH04330 | Soybean | plastid | 83.55 | 84.67 |
| GSMUA_Achr7P04710_001 | Banana | plastid | 77.63 | 83.69 |
| TraesCS1D01G278800.2 | Wheat | plastid | 80.26 | 83.56 |
| TraesCS1B01G288600.3 | Wheat | plastid | 80.26 | 83.56 |
| TraesCS1A01G279500.3 | Wheat | plastid | 80.26 | 83.56 |
| Bra010171.1-P | Field mustard | plastid | 78.95 | 76.43 |
| GSMUA_AchrUn_... | Banana | plastid | 73.03 | 74.0 |
| KRH58208 | Soybean | plastid | 59.21 | 73.17 |
| Os08t0159500-01 | Rice | nucleus | 80.92 | 66.85 |
| VIT_02s0012g00990.t01 | Wine grape | cytosol, extracellular, plastid | 82.24 | 65.44 |
| AT1G32540.1 | Thale cress | extracellular | 73.68 | 59.89 |
| CDY68066 | Canola | plastid | 55.26 | 59.57 |
| GSMUA_Achr3P27560_001 | Banana | extracellular | 78.95 | 57.97 |
| PGSC0003DMT400054616 | Potato | extracellular | 52.63 | 45.98 |
| HORVU1Hr1G073170.3 | Barley | plastid | 80.26 | 43.11 |
| Zm00001d049525_P004 | Maize | plastid | 53.29 | 40.3 |
| PGSC0003DMT400076422 | Potato | nucleus | 32.89 | 12.79 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400045143 | EnsemblPlantsGene:PGSC0003DMG400017509 | EntrezGene:102593263 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008219 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0031348 | GO:GO:0034051 | GO:GO:0045595 | InterPro:Multihaem_cyt_sf |
| InterPro:Znf_LSD1 | PFAM:PF06943 | PGSC:PGSC0003DMG400017509 | SEG:seg | SUPFAM:SSF48695 | TIGRFAMs:TIGR01053 |
| UniParc:UPI000295BDB3 | UniProt:M1BH58 | MapMan:27.2.1 | : | : | : |
Description
LOL1 (LSD ONE LIKE 1) [Source:PGSC_GENE;Acc:PGSC0003DMG400017509]
Coordinates
chr8:-:49797063..49800898
Molecular Weight (calculated)
15976.8 Da
IEP (calculated)
8.204
GRAVY (calculated)
0.474
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVPLAPYPT PPTPFTPPAN AGTQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ
101: VAHVNCGNCR MLLMYQYGAR SVKCAVCNFV TSVGVSIKSS LVLSLQSFML RQ
101: VAHVNCGNCR MLLMYQYGAR SVKCAVCNFV TSVGVSIKSS LVLSLQSFML RQ
001: MPVPLAPYPT PPAPALAPSY NTPPANGSTS GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV
101: NLALEANQVA HVNCGNCMML LMYQYGARSV KCAVCNFVTS VGGSTSTTDS KFNN
101: NLALEANQVA HVNCGNCMML LMYQYGARSV KCAVCNFVTS VGGSTSTTDS KFNN
Arabidopsis Description
LOL1lsd one like 1 [Source:TAIR;Acc:AT1G32540]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.