Factsheet for Bra038804.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 3
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98669	Canola	cytosol	92.78	94.24
CDX94003	Canola	mitochondrion	90.72	91.19
Bra013460.1-P	Field mustard	cytosol	82.99	83.42
Bra020924.1-P	Field mustard	cytosol	48.97	75.4
KRH43079	Soybean	extracellular	67.53	74.01
KRH59208	Soybean	extracellular	67.01	73.45
AT4G20380.8	Thale cress	extracellular	75.26	69.52
KRH37706	Soybean	mitochondrion	61.34	68.39
Solyc02g069720.2.1	Tomato	extracellular, mitochondrion	55.67	66.67
PGSC0003DMT400054616	Potato	extracellular	58.76	65.52
Os12t0611000-01	Rice	plastid	55.67	62.79
GSMUA_Achr7P00950_001	Banana	mitochondrion	54.64	59.22
KRH12749	Soybean	extracellular	61.34	58.91
TraesCS5D01G059500.1	Wheat	mitochondrion	54.12	58.66
TraesCS5B01G054000.1	Wheat	mitochondrion	54.12	58.66
EER91186	Sorghum	extracellular, mitochondrion, peroxisome, plastid	52.06	57.71
GSMUA_Achr7P08020_001	Banana	mitochondrion	53.09	57.54
Os03t0639600-01	Rice	mitochondrion, plastid	55.15	57.53
GSMUA_Achr6P31340_001	Banana	cytosol	36.08	56.91
TraesCS5A01G376200.1	Wheat	mitochondrion	52.06	56.11
TraesCS5B01G379800.1	Wheat	mitochondrion	52.06	56.11
TraesCS5D01G386200.2	Wheat	mitochondrion	52.06	55.8
Zm00001d033262_P001	Maize	extracellular	53.61	54.74
TraesCS5A01G048900.1	Wheat	cytosol, mitochondrion	54.12	53.3
Os08t0130100-01	Rice	cytosol	38.14	50.34
OQU79832	Sorghum	mitochondrion	38.14	46.25
TraesCS7A01G310500.1	Wheat	cytosol	31.44	46.21
Zm00001d035195_P001	Maize	mitochondrion	35.57	46.0
Bra010171.1-P	Field mustard	plastid	37.11	45.86
Zm00001d049625_P001	Maize	plastid	27.84	45.76
VIT_10s0092g00230.t01	Wine grape	extracellular, plasma membrane	59.79	44.79
HORVU7Hr1G074030.2	Barley	cytosol	30.41	44.7
TraesCS7D01G307000.1	Wheat	cytosol	29.9	43.94
HORVU5Hr1G093280.4	Barley	mitochondrion	52.06	43.91
KXG23966	Sorghum	mitochondrion	53.09	39.46
Bra020902.1-P	Field mustard	cytosol	25.77	35.71
Zm00001d041474_P001	Maize	mitochondrion	51.55	32.36

Protein Annotations

MapMan:27.2.1	EnsemblPlantsGene:Bra038804	EnsemblPlants:Bra038804.1	EnsemblPlants:Bra038804.1-P	GO:GO:0000303	GO:GO:0001666
GO:GO:0002240	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0008219	GO:GO:0009605	GO:GO:0009607	GO:GO:0009626	GO:GO:0009628	GO:GO:0009653
GO:GO:0009719	GO:GO:0009862	GO:GO:0009987	GO:GO:0010104	GO:GO:0010310	GO:GO:0010602
GO:GO:0010618	UniProt:M4FCI5	PFAM:PF06943	PANTHER:PTHR31747	PANTHER:PTHR31747:SF3	TIGRFAMs:TIGR01053
UniParc:UPI0002540C15	InterPro:Znf_LSD1	SEG:seg	:	:	:

Description

AT4G20380 (E=4e-071) LSD1 | zinc finger protein (LSD1)

Coordinates

chrA03:+:23978770..23979770

Molecular Weight (calculated)

20590.0 Da

IEP (calculated)

8.620

GRAVY (calculated)

-0.232

Length

194 amino acids

Sequence
(BLAST)

001: MQDQLVCHGC RNTLLYPRGA TNVRCALCNT INMVPPHPHP HPPPPPHAHA GMDMAHIVCG GCRTMLMYTR GASSVRCSCC QTVNLVPATP PTNQPAHVNC
101: GNCRTTLMYP YGAPSVRCAV CQFVTNVNMG NGRVPFPTNL PNGTASPGPM PSTSTQSTPP SQTQTVVVEN PMSVNESGKL VSNVVVGVTT DKKK

Best Arabidopsis Sequence Match ( AT4G20380.7 )
(BLAST)

001: MKVADMQDQL VCHGCRNLLM YPRGASNVRC ALCNTINMVP PPPPPHDMAH IICGGCRTML MYTRGASSVR CSCCQTTNLV PAHSNQVAHA PSSQVAQINC
101: GHCRTTLMYP YGASSVKCAV CQFVTNVNMS NGRVPLPTNR PNGTACPPST STSTPPSQTQ TVVVENPMSV DESGKLVSNV VVGVTTDKK

Arabidopsis Description

LSD1LSD1 zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.