Factsheet for Bra028662.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002487.1-P
Bra006665.1-P
Bra010569.1-P
Bra012650.1-P
Bra018126.1-P
Bra021765.1-P
Bra025431.1-P
Bra028174.1-P
Bra028181.1-P
Bra028406.1-P
Bra028662.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08330.1	Bra021765.1-P	AT2G31985.1	21798944
AT5G08330.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G08330.1	Bra012650.1-P	AT4G17680.1	21798944
AT5G08330.1	Bra010569.1-P	AT4G36690.1	21798944
AT5G08330.1	Bra028662.1-P	AT5G08330.1	21798944
AT5G08330.1	Bra025431.1-P	AT5G38420.1	21798944
AT5G08330.1	Bra028174.1-P	AT5G38420.1	21798944
AT5G08330.1	Bra028181.1-P	AT5G38420.1	21798944
AT5G08330.1	Bra028406.1-P	AT5G38420.1	21798944
AT5G08330.1	Bra002487.1-P	AT5G60340.1	21798944
AT5G08330.1	Bra006665.1-P	AT5G60340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44770	Canola	cytosol	94.32	96.0
Bra009338.1-P	Field mustard	nucleus	85.15	82.63
Bra005984.1-P	Field mustard	nucleus	82.1	80.34
AT5G08330.1	Thale cress	nucleus	83.41	79.92
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	68.56	72.69
Bra029366.1-P	Field mustard	cytosol	53.28	69.32
Bra009667.1-P	Field mustard	nucleus	70.74	64.8
KRH36141	Soybean	nucleus	65.5	60.98
KRG90619	Soybean	nucleus	62.01	58.68
Os03t0422702-00	Rice	cytosol, plastid	31.44	57.14
Zm00001d018530_P001	Maize	plastid	50.66	56.04
Os02t0828566-01	Rice	nucleus	55.02	53.39
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	56.33	52.87
TraesCS6D01G397000.1	Wheat	mitochondrion	44.54	51.78
TraesCS6B01G462100.1	Wheat	mitochondrion	44.54	51.52
TraesCS6A01G412800.1	Wheat	mitochondrion	44.54	51.52
EES07800	Sorghum	plastid	54.15	51.03
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	55.02	47.19
Bra016090.1-P	Field mustard	nucleus	41.48	26.69
Bra025528.1-P	Field mustard	nucleus	25.76	26.34
Bra003986.1-P	Field mustard	cytosol	26.2	24.49
Bra007875.1-P	Field mustard	cytosol	26.2	24.39
Bra008001.1-P	Field mustard	nucleus, plastid	38.86	23.8
Bra000395.1-P	Field mustard	nucleus	32.31	23.79
Bra004407.1-P	Field mustard	nucleus, plastid	33.19	23.68
Bra022568.1-P	Field mustard	cytosol	30.13	23.23
Bra039096.1-P	Field mustard	nucleus	27.95	23.02
Bra025244.1-P	Field mustard	nucleus	30.57	22.8
Bra004929.1-P	Field mustard	nucleus	31.44	22.22
Bra027886.1-P	Field mustard	nucleus, plastid	35.37	20.56
Bra018126.1-P	Field mustard	nucleus	36.24	17.81

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	EnsemblPlantsGene:Bra028662	EnsemblPlants:Bra028662.1	EnsemblPlants:Bra028662.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042752	GO:GO:0043433	InterPro:IPR017887
UniProt:M4EIP7	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF73	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI00025432C1	SEG:seg	:	:	:

Description

AT5G08330 (E=2e-054) | TCP family transcription factor, putative

Coordinates

chrA02:+:2649016..2649705

Molecular Weight (calculated)

23959.2 Da

IEP (calculated)

10.201

GRAVY (calculated)

-0.441

Length

229 amino acids

Sequence
(BLAST)

001: MENNDGAMTN GVIINKGPLN AVKKPPTKDR HSKVDGRGRR IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSITA ATGTGTTPPS FSTASLSASS
101: SPFALGKRFL RGEEGESGGP GGGGELTVGH AMSSGGGGFW AVPARQDFGQ VWSFAAGATP EMLFTQQQQA ATLFVRQQQQ QQASAAVAAM GEASAARVGN
201: YLPGHHLNLL ASLSGGSPGS GRREEDDSR

Best Arabidopsis Sequence Match ( AT5G08330.1 )
(BLAST)

001: MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR

Arabidopsis Description

TCP21Transcription factor TCP21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.