Factsheet for Bra028406.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra000807.1-P
Bra004617.1-P
Bra005001.1-P
Bra006136.1-P
Bra009783.1-P
Bra016938.1-P
Bra020466.1-P
Bra022254.1-P
Bra023354.1-P
Bra025315.1-P
Bra029527.1-P
Bra033264.1-P
Bra040144.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38420.1	Bra033264.1-P	AT1G01440.1	21798944
AT5G38420.1	Bra004617.1-P	AT2G41370.1	21798944
AT5G38420.1	Bra016938.1-P	AT2G41370.1	21798944
AT5G38420.1	Bra040144.1-P	AT3G04240.1	21798944
AT5G38420.1	Bra022254.1-P	AT3G17860.1	21798944
AT5G38420.1	Bra025315.1-P	AT3G27960.1	21798944
AT5G38420.1	Bra000807.1-P	AT4G04890.1	21798944
AT5G38420.1	Bra029527.1-P	AT4G04890.1	21798944
AT5G38420.1	Bra000638.1-P	AT4G08150.1	21798944
AT5G38420.1	Bra006136.1-P	AT5G11980.1	21798944
AT5G38420.1	Bra023354.1-P	AT5G11980.1	21798944
AT5G38420.1	Bra009783.1-P	AT5G24660.1	21798944
AT5G38420.1	Bra020466.1-P	AT5G24660.1	21798944
AT5G38430.1	Bra005001.1-P	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67402	Canola	plastid	99.45	99.45
CDY67657	Canola	plastid	97.24	97.24
Bra025431.1-P	Field mustard	plastid	94.48	94.48
Bra028174.1-P	Field mustard	plastid	94.48	94.48
Bra028181.1-P	Field mustard	plastid	84.53	94.44
AT5G38430.1	Thale cress	plastid	91.71	91.71
AT5G38410.3	Thale cress	plastid	92.82	90.32
AT5G38420.1	Thale cress	plastid	90.06	90.06
Bra034027.1-P	Field mustard	plastid	88.95	88.95
Bra034029.1-P	Field mustard	plastid	88.95	88.95
Bra034024.1-P	Field mustard	plastid	85.08	85.08
GSMUA_Achr8P18400_001	Banana	cytosol	11.05	76.92
PGSC0003DMT400067905	Potato	plastid	65.19	74.21
GSMUA_Achr10P...	Banana	plasma membrane	64.64	74.05
GSMUA_Achr2P22730_001	Banana	unclear	64.64	74.05
VIT_17s0000g03690.t01	Wine grape	plastid	72.93	73.33
PGSC0003DMT400062138	Potato	cytosol, plastid	72.38	72.38
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	72.38	72.38
PGSC0003DMT400032975	Potato	mitochondrion, plastid	71.82	72.22
GSMUA_Achr6P09710_001	Banana	plastid	62.98	72.15
Solyc03g034220.2.1	Tomato	plastid	70.72	71.11
Solyc02g085950.2.1	Tomato	extracellular	70.72	71.11
KRH46925	Soybean	plastid	34.81	70.0
Solyc02g063150.2.1	Tomato	nucleus, plastid	69.61	69.61
Os12t0274700-01	Rice	plastid	60.22	62.29
Os12t0291100-01	Rice	plastid	60.22	62.29
Zm00001d004894_P001	Maize	plastid	58.01	61.76
Os12t0292400-01	Rice	extracellular	59.67	61.71
Os12t0291400-01	Rice	plastid	59.67	61.71
EES09292	Sorghum	plastid	56.91	60.95
HORVU1Hr1G035720.2	Barley	plastid	59.12	60.8
Zm00001d052595_P001	Maize	plastid	56.91	60.59
HORVU5Hr1G033540.2	Barley	plastid	58.56	60.57
HORVU2Hr1G010630.1	Barley	plastid	58.56	60.57
HORVU2Hr1G010690.1	Barley	plastid	58.56	60.57
HORVU5Hr1G038630.1	Barley	plastid	58.56	60.57
HORVU5Hr1G051010.2	Barley	plastid	58.56	60.57
TraesCS2B01G079300.1	Wheat	plastid	58.01	60.34
TraesCS2D01G065300.1	Wheat	plastid	58.01	60.34
TraesCS2A01G066700.1	Wheat	plastid	58.01	60.34
TraesCS2B01G079200.1	Wheat	plastid	58.01	60.0
TraesCS5A01G165400.2	Wheat	plastid	58.01	60.0
TraesCS2D01G065600.1	Wheat	plastid	58.01	60.0
TraesCS2D01G065500.1	Wheat	plastid	54.7	60.0
KRH01757	Soybean	plastid	49.72	60.0
TraesCS2D01G065200.1	Wheat	plastid	58.01	60.0
TraesCS5A01G165700.1	Wheat	plastid	58.01	60.0
TraesCS2B01G079400.1	Wheat	plastid	58.01	60.0
TraesCS5B01G162600.1	Wheat	plastid	58.01	60.0
TraesCS2A01G067300.1	Wheat	plastid	58.01	60.0
TraesCS2A01G067200.1	Wheat	plastid	58.01	60.0
TraesCS5B01G162800.1	Wheat	plastid	58.01	60.0
TraesCS5D01G169600.2	Wheat	plastid	58.01	60.0
TraesCS5D01G169900.2	Wheat	plastid	58.01	60.0
TraesCS2B01G079100.1	Wheat	plastid	57.46	59.77
TraesCS2A01G067100.1	Wheat	plastid	57.46	59.43
TraesCS2D01G065400.1	Wheat	plastid	57.46	59.43
TraesCS2A01G066800.1	Wheat	plastid	57.46	59.43
TraesCS2D01G065100.2	Wheat	plastid	56.91	59.2
TraesCS2A01G067000.1	Wheat	plastid	56.35	58.29
TraesCS2B01G078900.2	Wheat	plastid	57.46	56.22
KRG99964	Soybean	plastid	30.94	56.0
HORVU2Hr1G010670.1	Barley	plastid	58.56	55.79
TraesCS2A01G066900.1	Wheat	plastid	58.01	54.69
TraesCS2B01G079500.1	Wheat	plastid	58.01	54.4
KRG99965	Soybean	plastid	39.23	54.2
Os12t0291200-00	Rice	plastid	24.86	46.88
HORVU5Hr1G050990.4	Barley	plastid	49.17	46.35
KRH15458	Soybean	plastid	39.23	44.65
HORVU7Hr1G048050.2	Barley	plastid	17.68	36.36

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EnsemblPlantsGene:Bra028406	EnsemblPlants:Bra028406.1
EnsemblPlants:Bra028406.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829
GO:GO:0016984	GO:GO:0055114	InterPro:IPR036385	UniProt:M4EHZ1	PFAM:PF00101	PFAM:PF12338
PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N
InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI0002543235	SEG:seg	:

Description

AT5G38410 (E=1e-092) | ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)

Coordinates

chrA02:-:109983..110787

Molecular Weight (calculated)

20227.2 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.175

Length

181 amino acids

Sequence
(BLAST)

001: MASSMLSSAT VVSSPAQAAM VAPFTGLKSS AAFPVTRKTN TDITSIASNG GRVNCMKVWP PVGKKKFETL SYLPDVTDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVQECKTEYP NAFIRIIGFD NNRQVQCISF IAYKPPSFTG A

Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A

Arabidopsis Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.