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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
TargetP:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G021800.1
HORVU1Hr1G092980.14
HORVU2Hr1G061320.3
HORVU2Hr1G067320.4
HORVU3Hr1G055550.3
HORVU3Hr1G106880.5
HORVU4Hr1G003360.1
HORVU4Hr1G003410.3
HORVU4Hr1G009730.1
HORVU4Hr1G087520.3
HORVU5Hr1G025740.13
HORVU5Hr1G060730.3
HORVU5Hr1G098570.6
HORVU6Hr1G069310.1
HORVU7Hr1G051710.1
HORVU7Hr1G082720.10

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G38420.1 HORVU0Hr1G021800.1 AT1G01440.1 21798944
AT5G38420.1 HORVU1Hr1G092980.14 AT1G01440.1 21798944
AT5G38420.1 HORVU3Hr1G055550.3 AT1G01440.1 21798944
AT5G38420.1 HORVU7Hr1G082720.10 AT1G01440.1 21798944
AT5G38420.1 HORVU3Hr1G106880.5 AT2G41370.1 21798944
AT5G38420.1 HORVU2Hr1G067320.4 AT3G04240.1 21798944
AT5G38420.1 HORVU4Hr1G087520.3 AT3G17860.1 21798944
AT5G38420.1 HORVU5Hr1G060730.3 AT3G17860.1 21798944
AT5G38420.1 HORVU6Hr1G069310.1 AT3G27960.1 21798944
AT5G38420.1 HORVU2Hr1G061320.3 AT4G08150.1 21798944
AT5G38420.1 HORVU4Hr1G003360.1 AT4G08150.1 21798944
AT5G38420.1 HORVU4Hr1G003410.3 AT4G08150.1 21798944
AT5G38420.1 HORVU4Hr1G009730.1 AT4G08150.1 21798944
AT5G38420.1 HORVU5Hr1G098570.6 AT4G08150.1 21798944
AT5G38420.1 HORVU5Hr1G025740.13 AT5G11980.1 21798944
AT5G38430.1 HORVU7Hr1G051710.1 AT2G39930.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0291200-00 Rice plastid 37.5 34.38
HORVU2Hr1G010690.1 Barley plastid 53.41 26.86
HORVU2Hr1G010630.1 Barley plastid 53.41 26.86
KRH46925 Soybean plastid 26.14 25.56
HORVU2Hr1G010670.1 Barley plastid 53.41 24.74
Os12t0291400-01 Rice plastid 48.86 24.57
HORVU5Hr1G051010.2 Barley plastid 47.73 24.0
HORVU5Hr1G038630.1 Barley plastid 47.73 24.0
HORVU1Hr1G035720.2 Barley plastid 47.73 23.86
Zm00001d052595_P001 Maize plastid 45.45 23.53
Os12t0292400-01 Rice extracellular 46.59 23.43
Os12t0274700-01 Rice plastid 46.59 23.43
HORVU5Hr1G033540.2 Barley plastid 46.59 23.43
EES09292 Sorghum plastid 44.32 23.08
Os12t0291100-01 Rice plastid 45.45 22.86
Zm00001d004894_P001 Maize plastid 43.18 22.35
HORVU5Hr1G050990.4 Barley plastid 45.45 20.83
KRG93872 Soybean plastid 31.82 20.74
PGSC0003DMT400032975 Potato mitochondrion, plastid 42.05 20.56
PGSC0003DMT400067905 Potato plastid 36.36 20.13
Solyc02g085950.2.1 Tomato extracellular 40.91 20.0
KRG99964 Soybean plastid 22.73 20.0
PGSC0003DMT400050381 Potato cytosol, extracellular, plastid 40.91 19.89
KRH18247 Soybean nucleus, plastid 38.64 19.1
GSMUA_Achr6P09710_001 Banana plastid 34.09 18.99
AT1G67090.1 Thale cress plastid 38.64 18.89
AT5G38430.1 Thale cress plastid 38.64 18.78
AT5G38420.1 Thale cress plastid 38.64 18.78
CDY01665 Canola plastid 38.64 18.78
PGSC0003DMT400062138 Potato cytosol, plastid 38.64 18.78
Solyc02g063150.2.1 Tomato nucleus, plastid 38.64 18.78
KRG93871 Soybean plastid 37.5 18.54
KRG93867 Soybean plastid 37.5 18.54
GSMUA_Achr10P... Banana plasma membrane 32.95 18.35
GSMUA_Achr2P22730_001 Banana unclear 32.95 18.35
Solyc03g034220.2.1 Tomato plastid 37.5 18.33
AT5G38410.3 Thale cress plastid 38.64 18.28
CDY52468 Canola plastid 37.5 18.23
Bra028174.1-P Field mustard plastid 37.5 18.23
CDX74532 Canola plastid 37.5 18.23
CDY01671 Canola plastid 37.5 18.23
CDY71122 Canola plastid 37.5 18.23
Bra028406.1-P Field mustard plastid 36.36 17.68
Bra025431.1-P Field mustard plastid 36.36 17.68
CDX74525 Canola plastid 36.36 17.68
CDY42338 Canola plastid 36.36 17.68
CDX67402 Canola plastid 36.36 17.68
CDY67657 Canola plastid 36.36 17.68
KRH01757 Soybean plastid 29.55 17.33
Bra028181.1-P Field mustard plastid 31.82 17.28
CDY12613 Canola plastid 35.23 17.13
Bra034027.1-P Field mustard plastid 35.23 17.13
Bra034029.1-P Field mustard plastid 35.23 17.13
CDX99682 Canola plastid 36.36 16.93
VIT_17s0000g03690.t01 Wine grape plastid 34.09 16.67
CDY12616 Canola plastid 34.09 16.57
Bra034024.1-P Field mustard plastid 34.09 16.57
CDY42337 Canola plastid 32.95 16.02
KRG99965 Soybean plastid 22.73 15.27
CDY42341 Canola plastid 31.82 15.05
KRH15458 Soybean plastid 25.0 13.84
KRG93873 Soybean plastid 14.77 12.38
GSMUA_Achr8P18400_001 Banana cytosol 3.41 11.54
CDY12612 Canola cytosol 13.64 9.92
Protein Annotations
EnsemblPlants:HORVU7Hr1G048050.2EnsemblPlantsGene:HORVU7Hr1G048050InterPro:RuBisCO_scInterPro:RuBisCO_ssu_NKEGG:00630+4.1.1.39KEGG:00710+4.1.1.39
PFAM:PF12338PRINTS:PR00152SEG:segTMHMM:TMhelixUniParc:UPI000B467E93UniProt:A0A287WDS4
MapMan:1.2.1.1.2:::::
Description
No Description!
Coordinates
chrchr7H:+:163449796..163450215
Molecular Weight (calculated)
6643.1 Da
IEP (calculated)
11.580
GRAVY (calculated)
0.286
Length
88 amino acids
Sequence
(BLAST)
1: MASSATTVAP FQGLKSTAGL PVSRRSGSAG LSSVSNGGRI RCMQVWKPII IFAKDDAAGF ILLFXXXXXX XXXXXXXXXX XXXXXXXX
Best Arabidopsis Sequence Match ( AT1G67090.2 )
(BLAST)
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFD
101: TDLCTVSTVT HPDTMMDGTG QCGSFPCSVA PTPLKC
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.