CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67090.1	CDX74635	AT5G35750.1	18642946
AT1G67090.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034027.1-P	Field mustard	plastid	72.73	48.62
CDY12613	Canola	plastid	72.73	48.62
CDY67657	Canola	plastid	71.9	48.07
CDX67402	Canola	plastid	71.07	47.51
CDY42338	Canola	plastid	71.07	47.51
AT1G67090.1	Thale cress	plastid	70.25	47.22
CDY52468	Canola	plastid	70.25	46.96
CDY71122	Canola	plastid	70.25	46.96
CDY01665	Canola	plastid	70.25	46.96
CDX74532	Canola	plastid	70.25	46.96
CDX74525	Canola	plastid	70.25	46.96
CDY01671	Canola	plastid	70.25	46.96
CDY12616	Canola	plastid	69.42	46.41
CDY42337	Canola	plastid	69.42	46.41
CDX99682	Canola	plastid	69.42	44.44
CDY42341	Canola	plastid	67.77	44.09
GSMUA_Achr10P...	Banana	plasma membrane	57.02	43.67
GSMUA_Achr2P22730_001	Banana	unclear	57.02	43.67
GSMUA_Achr6P09710_001	Banana	plastid	54.55	41.77
PGSC0003DMT400067905	Potato	plastid	54.55	41.51
Os12t0292400-01	Rice	extracellular	57.85	40.0
Os12t0291400-01	Rice	plastid	57.85	40.0
Os12t0291100-01	Rice	plastid	57.85	40.0
Os12t0274700-01	Rice	plastid	57.85	40.0
KRH01757	Soybean	plastid	48.76	39.33
HORVU5Hr1G038630.1	Barley	plastid	56.2	38.86
HORVU5Hr1G051010.2	Barley	plastid	56.2	38.86
HORVU5Hr1G033540.2	Barley	plastid	56.2	38.86
HORVU2Hr1G010690.1	Barley	plastid	56.2	38.86
HORVU2Hr1G010630.1	Barley	plastid	56.2	38.86
Zm00001d004894_P001	Maize	plastid	54.55	38.82
HORVU1Hr1G035720.2	Barley	plastid	56.2	38.64
TraesCS2B01G079100.1	Wheat	plastid	55.37	38.51
TraesCS2A01G066700.1	Wheat	plastid	55.37	38.51
TraesCS2D01G065300.1	Wheat	plastid	55.37	38.51
TraesCS2B01G079300.1	Wheat	plastid	55.37	38.51
Solyc02g085950.2.1	Tomato	extracellular	57.02	38.33
TraesCS2A01G067300.1	Wheat	plastid	55.37	38.29
TraesCS5D01G169600.2	Wheat	plastid	55.37	38.29
TraesCS2A01G067100.1	Wheat	plastid	55.37	38.29
TraesCS2A01G067000.1	Wheat	plastid	55.37	38.29
TraesCS2A01G066800.1	Wheat	plastid	55.37	38.29
TraesCS2B01G079200.1	Wheat	plastid	55.37	38.29
TraesCS2B01G079400.1	Wheat	plastid	55.37	38.29
TraesCS2D01G065200.1	Wheat	plastid	55.37	38.29
TraesCS2D01G065400.1	Wheat	plastid	55.37	38.29
TraesCS5D01G169900.2	Wheat	plastid	55.37	38.29
TraesCS2D01G065600.1	Wheat	plastid	55.37	38.29
TraesCS5A01G165400.2	Wheat	plastid	55.37	38.29
TraesCS5A01G165700.1	Wheat	plastid	55.37	38.29
TraesCS5B01G162600.1	Wheat	plastid	55.37	38.29
TraesCS5B01G162800.1	Wheat	plastid	55.37	38.29
Zm00001d052595_P001	Maize	plastid	53.72	38.24
PGSC0003DMT400062138	Potato	cytosol, plastid	57.02	38.12
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	57.02	38.12
TraesCS2D01G065100.2	Wheat	plastid	54.55	37.93
VIT_17s0000g03690.t01	Wine grape	plastid	56.2	37.78
PGSC0003DMT400032975	Potato	mitochondrion, plastid	56.2	37.78
TraesCS2A01G067200.1	Wheat	plastid	54.55	37.71
TraesCS2D01G065500.1	Wheat	plastid	51.24	37.58
Solyc02g063150.2.1	Tomato	nucleus, plastid	56.2	37.57
EES09292	Sorghum	plastid	52.07	37.28
Solyc03g034220.2.1	Tomato	plastid	55.37	37.22
TraesCS2B01G078900.2	Wheat	plastid	55.37	36.22
HORVU2Hr1G010670.1	Barley	plastid	56.2	35.79
TraesCS2A01G066900.1	Wheat	plastid	55.37	34.9
TraesCS2B01G079500.1	Wheat	plastid	55.37	34.72
GSMUA_Achr8P18400_001	Banana	cytosol	5.79	26.92
HORVU5Hr1G050990.4	Barley	plastid	42.15	26.56
KRG99965	Soybean	plastid	21.49	19.85
KRH15458	Soybean	plastid	19.01	14.47
HORVU7Hr1G048050.2	Barley	plastid	9.92	13.64
KRH46925	Soybean	plastid	9.09	12.22
Os12t0291200-00	Rice	plastid	9.09	11.46
KRG99964	Soybean	plastid	9.09	11.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	GO:A0A078FI23	UniProt:A0A078FI23
EnsemblPlants:CDY12612	ProteinID:CDY12612	ProteinID:CDY12612.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491
GO:GO:0016829	GO:GO:0016984	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00070114001	InterPro:IPR036385	PFAM:PF00101
PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	MetaCyc:PWY-5532	MetaCyc:PWY-5723	InterPro:RuBisCO_sc
InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI0004EEB45C	:

Description

BnaA02g12800DRibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A078FI23]

Coordinates

chrLK032025:-:208164..210318

Molecular Weight (calculated)

14268.0 Da

IEP (calculated)

8.449

GRAVY (calculated)

-0.301

Length

121 amino acids

Sequence
(BLAST)

001: MAPLKIFDGS ISGREFFRIR FEDKSLGYSF LFPFNHSIFN YFHGFVYREH GNIPGYYDGR YWTMWKLPLF GCTDSAQVLK EVQECKKEYP NAFIRIIGFD
101: NNRQAQCISF IAYKPPSFTD A

Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A

Arabidopsis Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.