Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G169600.2 | Wheat | plastid | 100.0 | 100.0 |
TraesCS5A01G165700.1 | Wheat | plastid | 100.0 | 100.0 |
HORVU5Hr1G051010.2 | Barley | plastid | 99.43 | 99.43 |
HORVU5Hr1G038630.1 | Barley | plastid | 99.43 | 99.43 |
HORVU5Hr1G033540.2 | Barley | plastid | 98.86 | 98.86 |
TraesCS2A01G066700.1 | Wheat | plastid | 93.71 | 94.25 |
TraesCS2A01G067300.1 | Wheat | plastid | 93.71 | 93.71 |
TraesCS2A01G066800.1 | Wheat | plastid | 93.71 | 93.71 |
TraesCS2A01G067100.1 | Wheat | plastid | 93.14 | 93.14 |
TraesCS2A01G067200.1 | Wheat | plastid | 92.57 | 92.57 |
TraesCS2A01G067000.1 | Wheat | plastid | 91.43 | 91.43 |
TraesCS2A01G066900.1 | Wheat | plastid | 93.71 | 85.42 |
Os12t0291400-01 | Rice | plastid | 85.14 | 85.14 |
Os12t0291100-01 | Rice | plastid | 82.86 | 82.86 |
Os12t0292400-01 | Rice | extracellular | 82.86 | 82.86 |
Os12t0274700-01 | Rice | plastid | 81.71 | 81.71 |
Zm00001d004894_P001 | Maize | plastid | 74.86 | 77.06 |
Zm00001d052595_P001 | Maize | plastid | 74.86 | 77.06 |
GSMUA_Achr8P18400_001 | Banana | cytosol | 11.43 | 76.92 |
EES09292 | Sorghum | plastid | 74.29 | 76.92 |
GSMUA_Achr10P... | Banana | plasma membrane | 65.71 | 72.78 |
GSMUA_Achr6P09710_001 | Banana | plastid | 65.14 | 72.15 |
GSMUA_Achr2P22730_001 | Banana | unclear | 63.43 | 70.25 |
PGSC0003DMT400067905 | Potato | plastid | 62.86 | 69.18 |
PGSC0003DMT400032975 | Potato | mitochondrion, plastid | 66.86 | 65.0 |
Bra028181.1-P | Field mustard | plastid | 57.71 | 62.35 |
PGSC0003DMT400050381 | Potato | cytosol, extracellular, plastid | 64.0 | 61.88 |
PGSC0003DMT400062138 | Potato | cytosol, plastid | 64.0 | 61.88 |
Solyc02g085950.2.1 | Tomato | extracellular | 63.43 | 61.67 |
AT1G67090.1 | Thale cress | plastid | 63.43 | 61.67 |
Solyc02g063150.2.1 | Tomato | nucleus, plastid | 63.43 | 61.33 |
AT5G38420.1 | Thale cress | plastid | 63.43 | 61.33 |
Solyc03g034220.2.1 | Tomato | plastid | 62.86 | 61.11 |
KRH18247 | Soybean | nucleus, plastid | 61.71 | 60.67 |
KRG93867 | Soybean | plastid | 61.71 | 60.67 |
KRG93871 | Soybean | plastid | 61.71 | 60.67 |
Os12t0291200-00 | Rice | plastid | 33.14 | 60.42 |
AT5G38430.1 | Thale cress | plastid | 62.29 | 60.22 |
AT5G38410.3 | Thale cress | plastid | 64.0 | 60.22 |
VIT_17s0000g03690.t01 | Wine grape | plastid | 61.71 | 60.0 |
CDY67657 | Canola | plastid | 61.14 | 59.12 |
CDY01665 | Canola | plastid | 61.14 | 59.12 |
CDY52468 | Canola | plastid | 61.14 | 59.12 |
CDY71122 | Canola | plastid | 61.14 | 59.12 |
Bra028174.1-P | Field mustard | plastid | 61.14 | 59.12 |
Bra034029.1-P | Field mustard | plastid | 60.57 | 58.56 |
CDY12613 | Canola | plastid | 60.57 | 58.56 |
Bra034027.1-P | Field mustard | plastid | 60.57 | 58.56 |
CDX67402 | Canola | plastid | 60.57 | 58.56 |
CDX74525 | Canola | plastid | 60.57 | 58.56 |
CDX74532 | Canola | plastid | 60.57 | 58.56 |
Bra025431.1-P | Field mustard | plastid | 60.57 | 58.56 |
CDY01671 | Canola | plastid | 60.57 | 58.56 |
CDY42338 | Canola | plastid | 60.57 | 58.56 |
Bra028406.1-P | Field mustard | plastid | 60.0 | 58.01 |
CDY12616 | Canola | plastid | 58.86 | 56.91 |
Bra034024.1-P | Field mustard | plastid | 58.86 | 56.91 |
CDY42337 | Canola | plastid | 58.29 | 56.35 |
CDX99682 | Canola | plastid | 60.57 | 56.08 |
CDY12612 | Canola | cytosol | 38.29 | 55.37 |
CDY42341 | Canola | plastid | 57.14 | 53.76 |
KRG93872 | Soybean | plastid | 40.57 | 52.59 |
KRH46925 | Soybean | plastid | 26.29 | 51.11 |
KRG93873 | Soybean | plastid | 29.14 | 48.57 |
KRH01757 | Soybean | plastid | 40.57 | 47.33 |
KRG99965 | Soybean | plastid | 32.57 | 43.51 |
KRG99964 | Soybean | plastid | 24.57 | 43.0 |
KRH15458 | Soybean | plastid | 32.0 | 35.22 |
Protein Annotations
EnsemblPlants:TraesCS5A01G165400.2 | EnsemblPlantsGene:TraesCS5A01G165400 | Gene3D:3.30.190.10 | InterPro:IPR036385 | InterPro:RuBisCO_sc | InterPro:RuBisCO_sc_dom |
InterPro:RuBisCO_ssu_N | InterPro:RuBisCO_ssu_sf | KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | PANTHER:PTHR31262 | PFAM:PF00101 |
PFAM:PF12338 | PRINTS:PR00152 | SMART:SM00961 | SUPFAM:SSF55239 | TIGR:cd03527 | MapMan:1.2.1.1.2 |
Description
No Description!
Coordinates
chr5A:+:353988495..353989233
Molecular Weight (calculated)
19491.5 Da
IEP (calculated)
8.707
GRAVY (calculated)
-0.144
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTVMASSA TSVAPFQGLK STAGLPVSRR SNGASLGSVS NGGRIRCMQV WPIEGIKKFE TLSYLPPLST EALLKQVDYL IRSKWVPCLE FSKVGFIFRE
101: HNASPGYYDG RYWTMWKLPM FGCTDATQVI NEVEEVKKEY PDAYVRIIGF DNMRQVQCVS FIAFKPPGCE ESGKA
101: HNASPGYYDG RYWTMWKLPM FGCTDATQVI NEVEEVKKEY PDAYVRIIGF DNMRQVQCVS FIAFKPPGCE ESGKA
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.