Factsheet for TraesCS3B01G537400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G492200.1
TraesCS2B01G520300.1
TraesCS2D01G492400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	TraesCS2A01G492200.1	AT3G51180.1	21798944
AT2G41370.1	TraesCS2B01G520300.1	AT3G51180.1	21798944
AT2G41370.1	TraesCS2D01G492400.1	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G484100.1	Wheat	cytosol	99.22	99.8
TraesCS3A01G489000.1	Wheat	cytosol	99.22	99.22
HORVU3Hr1G106880.5	Barley	cytosol	97.86	98.05
Zm00001d011878_P001	Maize	cytosol	83.07	87.14
Zm00001d042111_P001	Maize	cytosol	85.41	86.42
OQU88196	Sorghum	cytosol	85.21	86.39
Os01t0948900-01	Rice	cytosol	55.84	85.16
GSMUA_Achr5P16220_001	Banana	cytosol	64.4	75.06
GSMUA_Achr11P...	Banana	cytosol	61.87	73.61
VIT_08s0007g05740.t01	Wine grape	cytosol	68.09	71.43
KRH72058	Soybean	cytosol	66.15	71.43
Solyc04g040220.2.1	Tomato	cytosol	64.2	70.82
PGSC0003DMT400027591	Potato	cytosol	63.42	70.72
CDY23854	Canola	cytosol	66.15	70.69
CDX79940	Canola	cytosol	43.39	70.35
AT2G41370.1	Thale cress	cytosol	67.12	70.26
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	66.54	70.23
KRH66789	Soybean	cytosol	66.54	70.23
Bra004617.1-P	Field mustard	cytosol	43.19	70.03
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	66.34	70.02
PGSC0003DMT400076710	Potato	cytosol	66.15	69.82
Solyc10g079750.1.1	Tomato	cytosol	65.56	69.06
Bra016938.1-P	Field mustard	cytosol	65.37	68.99
PGSC0003DMT400021076	Potato	cytosol	65.56	68.78
AT3G57130.1	Thale cress	cytosol	62.26	68.52
Solyc10g079460.1.1	Tomato	cytosol	65.76	68.42
Bra007306.1-P	Field mustard	cytosol	61.28	68.18
CDX76040	Canola	cytosol	38.52	68.04
Bra014645.1-P	Field mustard	cytosol	38.52	68.04
CDX72067	Canola	cytosol	61.28	68.03
CDY06130	Canola	cytosol	60.89	67.75
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	60.51	67.32
CDY35774	Canola	cytosol	37.94	67.01
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	59.92	66.67
CDY30971	Canola	cytosol	58.37	65.93
TraesCS5B01G133700.1	Wheat	cytosol	59.34	61.87
Solyc05g018160.1.1	Tomato	cytosol	28.99	53.21
CDY33841	Canola	cytosol	8.75	45.45
TraesCS3B01G123800.1	Wheat	cytosol	24.9	22.18
TraesCS3B01G337700.1	Wheat	plastid	25.1	21.18
TraesCS4B01G018900.2	Wheat	cytosol, plastid	22.18	18.97

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12796
PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	EnsemblPlantsGene:TraesCS3B01G537400	EnsemblPlants:TraesCS3B01G537400.1
TIGR:cd00204	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:777578683..777581269

Molecular Weight (calculated)

54203.0 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.017

Length

514 amino acids

Sequence
(BLAST)

001: MDDTLKSLSM DYLNLLINGQ AFSDVTFSVE GRLVHAHRCI LAARSLFFRK FFCGAAADQA AAAAAAGSPG AVLMDHLSPR SPSGASASSP RGAGGSGSGS
101: ASAAAMAPGA VIPVNSVSYE VFLLLLQFLY SGQVSLVPQK GEPRPGCGER GCWHTHCPAA VDLALDTLAV ARSFGVEELA VLTQKQLAGM VEKASIEDVM
201: KVLMASRKQD LHQLWNTCSH LVAKSGLPPE VLAKHLPLDV VAKIDDLRLK SSMSRRSPFL AHHQQHQQHH HQGSVIEASA AELDDHNKIR RMRRALDSSD
301: VELVKLMVMG EGLNLDEALA LHYAVENCSR EVVKALLELG AADVNHPAGP AGKTPLHVAA EMVCPDMVAV LLDHHADPNV RTVDGVTPLD ILRTLTSDFL
401: FKGAVPGLTH IEPNKLRLCL ELVQSAAMVM SREDAAGNAP VPMYSDHHPG AGGGGVYSGT GGASTSMNLS LDNRMVYLNL GMDVMNHGDG GGDDGGSRSG
501: QGGPSSLFSP HGFP

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.