CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73744
CDX77980

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	CDX73744	AT3G51180.1	21798944
AT2G41370.1	CDX77980	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79940	Canola	cytosol	64.03	97.16
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	93.76	92.61
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	93.56	92.4
AT2G41370.1	Thale cress	cytosol	93.56	91.65
CDX76040	Canola	cytosol	48.02	79.38
CDY35774	Canola	cytosol	47.4	78.35
VIT_08s0007g05740.t01	Wine grape	cytosol	79.63	78.16
KRH72058	Soybean	cytosol	77.13	77.94
CDY06130	Canola	cytosol	74.84	77.92
CDX72067	Canola	cytosol	74.84	77.75
KRH66789	Soybean	cytosol	78.59	77.62
PGSC0003DMT400027591	Potato	cytosol	73.8	77.01
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	73.18	76.19
Solyc04g040220.2.1	Tomato	cytosol	73.18	75.54
Solyc10g079750.1.1	Tomato	cytosol	76.51	75.41
PGSC0003DMT400076710	Potato	cytosol	76.3	75.36
CDY30971	Canola	cytosol	71.1	75.16
GSMUA_Achr5P16220_001	Banana	cytosol	67.15	73.24
PGSC0003DMT400021076	Potato	cytosol	74.43	73.06
Solyc10g079460.1.1	Tomato	cytosol	74.22	72.27
GSMUA_AchrUn_...	Banana	cytosol	62.79	72.08
GSMUA_Achr5P08160_001	Banana	cytosol	63.62	71.66
GSMUA_Achr11P...	Banana	cytosol	64.03	71.3
GSMUA_Achr3P08710_001	Banana	cytosol	62.58	70.66
Zm00001d011878_P001	Maize	cytosol	70.06	68.78
GSMUA_Achr8P22070_001	Banana	cytosol	59.04	68.43
Os01t0948900-01	Rice	cytosol	47.82	68.25
OQU88196	Sorghum	cytosol	70.69	67.06
Zm00001d042111_P001	Maize	cytosol	70.48	66.73
TraesCS3D01G484100.1	Wheat	cytosol	70.69	66.54
TraesCS3A01G489000.1	Wheat	cytosol	70.69	66.15
TraesCS3B01G537400.1	Wheat	cytosol	70.69	66.15
HORVU3Hr1G106880.5	Barley	cytosol	70.06	65.69
GSMUA_AchrUn_...	Banana	cytosol	58.42	62.72
Zm00001d023246_P001	Maize	cytosol	59.88	60.63
EES16520	Sorghum	cytosol	60.5	60.62
Zm00001d052468_P002	Maize	cytosol	59.25	60.51
Solyc05g018160.1.1	Tomato	cytosol	35.14	60.36
Zm00001d004966_P001	Maize	cytosol	58.21	59.2
EES09234	Sorghum	cytosol	59.46	59.09
TraesCS5A01G134700.2	Wheat	cytosol	60.29	58.82
TraesCS5B01G133700.1	Wheat	cytosol	60.29	58.82
TraesCS5D01G139600.1	Wheat	cytosol	60.29	58.82
Os11t0141900-00	Rice	cytosol	60.29	58.7
Os12t0138500-01	Rice	cytosol	38.88	57.54
CDY33841	Canola	cytosol	9.98	48.48
CDY26398	Canola	plastid	26.4	22.6
CDX82577	Canola	plastid	24.95	22.14
CDX78955	Canola	plastid	27.03	22.11
CDY39410	Canola	plastid	24.74	21.79
CDX99350	Canola	plastid	26.61	21.77
CDY34413	Canola	cytosol	24.53	20.74
CDY25575	Canola	cytosol	23.91	20.18
CDX94376	Canola	cytosol	22.87	18.15
CDX89364	Canola	cytosol	22.87	18.09
CDY50004	Canola	cytosol	22.25	17.95
CDX89362	Canola	cytosol	22.45	17.85
CDX94371	Canola	cytosol	22.25	17.69
CDY36698	Canola	cytosol	17.46	16.5
CDY14314	Canola	nucleus	17.88	10.21

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	UniProt:A0A078GEU9	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	EnsemblPlants:CDY23854	ProteinID:CDY23854	ProteinID:CDY23854.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00024275001	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12796	PFscan:PS50088
PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	UniPathway:UPA00143	UniParc:UPI0004EF31F7	SEG:seg

Description

BnaC04g01830DBnaC04g01830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEU9]

Coordinates

chrLK032150:+:182770..184788

Molecular Weight (calculated)

52897.2 Da

IEP (calculated)

6.687

GRAVY (calculated)

-0.214

Length

481 amino acids

Sequence
(BLAST)

001: MSSLEESLRS LSLDYLNLLI NGQAFSDVTF SVDGRLVHAH RCILAARSLF FRKFFCGTDS PQPGTGIDPT RHGSVPVSST RGSQAPAGVI PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PTPNCGERGC WHIHCSAAVD LALDTLAASR YFGVEQLALL TQKQLVSMVE KAAIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLTIDVVA KIEEIRLKYS IARRSLMPHH HHHDLTAAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGASD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNNDH NNAIYPQMND ERNSGSSGGS NNNLDSRFVY LNLGAGQIGP GRDHGDDHNS QREGMSRHHH DPSTMYHQHH F

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.