CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89967
CDY05010
CDY14061
CDY15245
CDY32466
CDY72572

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	CDX89967	AT1G02450.1	21798944
AT5G45110.1	CDY15245	AT1G02450.1	21798944
AT5G45110.1	CDY32466	AT1G02450.1	21798944
AT5G45110.1	CDY72572	AT1G02450.1	21798944
AT5G45110.1	CDY05010	AT5G06960.1	21798944
AT5G45110.1	CDY14061	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26398	Canola	plastid	72.3	65.48
CDY39410	Canola	plastid	69.35	64.65
CDX82577	Canola	plastid	68.17	64.02
AT5G45110.1	Thale cress	cytosol, plastid	67.78	58.87
CDX78955	Canola	plastid	58.35	50.51
CDX99350	Canola	plastid	58.15	50.34
KRH36735	Soybean	cytosol, plastid	48.92	42.2
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	47.74	41.4
KRH11740	Soybean	plastid	47.74	41.19
Solyc02g069310.2.1	Tomato	cytosol, plastid	44.01	38.55
PGSC0003DMT400054660	Potato	cytosol, plastid	44.01	38.55
GSMUA_Achr5P02120_001	Banana	cytosol	43.61	38.01
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	42.83	36.64
Zm00001d013581_P001	Maize	cytosol	13.95	35.32
EES01524	Sorghum	plastid	40.67	33.33
Zm00001d012660_P002	Maize	cytosol	40.47	33.17
Os01t0767900-01	Rice	plastid	41.26	33.07
TraesCS3B01G337700.1	Wheat	plastid	39.49	33.0
TraesCS3D01G302900.1	Wheat	cytosol, plastid	39.29	32.95
TraesCS3A01G298800.1	Wheat	plastid	39.88	32.85
HORVU3Hr1G074640.4	Barley	cytosol, plastid	39.29	32.41
EER91108	Sorghum	plastid	36.35	30.94
Zm00001d034944_P004	Maize	cytosol	27.5	30.77
Os03t0667100-01	Rice	cytosol	34.38	29.71
TraesCS4B01G018900.2	Wheat	cytosol, plastid	34.58	29.28
HORVU4Hr1G003040.1	Barley	cytosol, plastid	33.79	29.2
TraesCS4D01G017500.1	Wheat	cytosol	33.99	29.03
TraesCS4A01G294400.1	Wheat	cytosol, plastid	34.18	28.95
CDY25575	Canola	cytosol	29.86	26.67
CDY34413	Canola	cytosol	29.67	26.54
CDX94376	Canola	cytosol	29.08	24.42
CDY50004	Canola	cytosol	28.49	24.33
CDX89364	Canola	cytosol	28.88	24.18
CDX94371	Canola	cytosol	27.11	22.81
CDX89362	Canola	cytosol	26.72	22.48
CDX72067	Canola	cytosol	16.11	17.71
CDY06130	Canola	cytosol	15.91	17.53
CDY23854	Canola	cytosol	16.5	17.46
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	16.5	17.25
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	16.5	17.25
CDY33841	Canola	cytosol	3.34	17.17
CDY30971	Canola	cytosol	15.13	16.92
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	15.13	16.67
CDX79940	Canola	cytosol	9.04	14.51
CDX76040	Canola	cytosol	7.66	13.4
CDY14314	Canola	nucleus	21.41	12.95
CDY35774	Canola	cytosol	7.27	12.71

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A078HIP8	InterPro:BTB/POZ_dom	EnsemblPlants:CDY36698	ProteinID:CDY36698
ProteinID:CDY36698.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00062477001	InterPro:IPR000210
InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12313	PFscan:PS50097
PANTHER:PTHR24413	PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	UniPathway:UPA00143
UniParc:UPI0004EC0607	SEG:seg	:	:	:	:

Description

BnaC02g31190DBnaC02g31190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIP8]

Coordinates

chrLK032382:-:11635..14543

Molecular Weight (calculated)

57379.3 Da

IEP (calculated)

6.216

GRAVY (calculated)

-0.470

Length

509 amino acids

Sequence
(BLAST)

001: MKQIRVAKVE HESMRDSSKI ARQDKGLELV LSVQEKNPNP NVTCKTRDGL SQGSSFKSAR SVKNADTKER ETLEESQGFT SSRFSNVSTG SNHISPSSAS
101: NLQVISLTKL SSNLEQLPSS PDCDYTDAKI IVEGVPVGVH RCILAERSKF FEELFKKDKK RSKIERPKYH LKEVVPYGAV VGQEAFVHFL SYVYTGRLKP
201: YPLEVSTCVD SLCAHDSCRP AIDFVVRRLC NFVEKSLVEN VIPILLVAFY CKLTQLLDQC IERVARSGLY RFCIEKEVPL EVAERIKQIS LKSPQEEEEN
301: SPKLLLTESD ITLDEANGLH YSVVYSDPKV IAEILMVADS PMCSLSMPED LQMRLLYLEK RVGLARLFFP TEANVAMDIA NVEGTREFTG PPPPSHGLTG
401: NLSQVDLNET PHANQKTSYS YGGSNENRRY FPYGLEVLDK YMEEYIDDDI LDDLHIEKGS PLERRLKRMR YRELKDDVQK AYRKDKESCL SASSSPSSSS
501: LRDGLENSA

Best Arabidopsis Sequence Match ( AT4G19660.1 )
(BLAST)

001: MAATAIEPSS SISFTSSHLS NPSPVVTTYH SAANLEELSS NLEQLLTNPD CDYTDAEIII EEEANPVSVH RCVLAARSKF FLDLFKKDKD SSEKKPKYQM
101: KDLLPYGNVG REAFLHFLSY IYTGRLKPFP IEVSTCVDSV CAHDSCKPAI DFAVELMYAS FVFQIPDLVS SFQRKLRNYV EKSLVENVLP ILLVAFHCDL
201: TQLLDQCIER VARSDLDRFC IEKELPLEVL EKIKQLRVKS VNIPEVEDKS IERTGKVLKA LDSDDVELVK LLLTESDITL DQANGLHYAV AYSDPKVVTQ
301: VLDLDMADVN FRNSRGYTVL HIAAMRREPT IIIPLIQKGA NASDFTFDGR SAVNICRRLT RPKDYHTKTS RKEPSKYRLC IDILEREIRR NPLVSGDTPT
401: CSHSMPEDLQ MRLLYLEKRV GLAQLFFPAE ANVAMDVANV EGTSECTGLL TPPPSNDTTE NLGKVDLNET PYVQTKRMLT RMKALMKTVE TGRRYFPSCY
501: EVLDKYMDQY MDEEIPDMSY PEKGTVKERR QKRMRYNELK NDVKKAYSKD KVARSCLSSS SPASSLREAL ENPT

Arabidopsis Description

NPR4NPR1-like protein 4 [Source:TAIR;Acc:AT4G19660]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.