CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78955	Canola	plastid	97.96	97.96
AT4G19660.2	Thale cress	cytosol, plastid	80.61	78.87
CDX82577	Canola	plastid	68.54	74.35
CDY26398	Canola	plastid	70.92	74.2
CDY39410	Canola	plastid	68.71	73.99
KRH11740	Soybean	plastid	61.56	61.36
KRH36735	Soybean	cytosol, plastid	61.56	61.36
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	59.86	59.97
CDY36698	Canola	cytosol	50.34	58.15
Solyc02g069310.2.1	Tomato	cytosol, plastid	53.74	54.39
GSMUA_Achr5P02120_001	Banana	cytosol	53.91	54.28
PGSC0003DMT400054660	Potato	cytosol, plastid	53.4	54.04
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	53.74	53.11
Zm00001d012660_P002	Maize	cytosol	53.4	50.56
EES01524	Sorghum	plastid	52.89	50.08
TraesCS3B01G337700.1	Wheat	plastid	51.02	49.26
TraesCS3D01G302900.1	Wheat	cytosol, plastid	50.34	48.76
HORVU3Hr1G074640.4	Barley	cytosol, plastid	51.02	48.62
TraesCS3A01G298800.1	Wheat	plastid	50.85	48.38
Os01t0767900-01	Rice	plastid	51.53	47.72
Zm00001d034944_P004	Maize	cytosol	35.54	45.93
Os03t0667100-01	Rice	cytosol	44.73	44.65
EER91108	Sorghum	plastid	44.56	43.81
HORVU4Hr1G003040.1	Barley	cytosol, plastid	42.52	42.44
TraesCS4A01G294400.1	Wheat	cytosol, plastid	43.37	42.43
TraesCS4B01G018900.2	Wheat	cytosol, plastid	43.2	42.26
TraesCS4D01G017500.1	Wheat	cytosol	42.69	42.11
Zm00001d013581_P001	Maize	cytosol	13.78	40.3
CDY34413	Canola	cytosol	36.73	37.96
CDY25575	Canola	cytosol	36.73	37.89
CDX94371	Canola	cytosol	34.86	33.88
CDX89362	Canola	cytosol	34.86	33.88
CDY50004	Canola	cytosol	34.01	33.56
CDX89364	Canola	cytosol	33.16	32.07
CDX94376	Canola	cytosol	32.99	32.01
CDX79940	Canola	cytosol	14.46	26.81
CDX72067	Canola	cytosol	21.09	26.78
CDY06130	Canola	cytosol	20.92	26.62
CDY23854	Canola	cytosol	21.77	26.61
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	21.94	26.49
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	21.94	26.49
CDY30971	Canola	cytosol	20.24	26.15
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	20.41	25.97
CDX76040	Canola	cytosol	12.59	25.43
CDY35774	Canola	cytosol	12.41	25.09
CDY33841	Canola	cytosol	3.91	23.23
CDY14314	Canola	nucleus	29.25	20.43

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.1	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	EnsemblPlants:CDX99350	ProteinID:CDX99350	ProteinID:CDX99350.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00107648001	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12313	PFAM:PF12796
PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	UniPathway:UPA00143	UniParc:UPI0004EE0614
SEG:seg	:	:	:	:	:

Description

BnaC01g12020D

Coordinates

chrLK031910:+:14252..16753

Molecular Weight (calculated)

66273.9 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.427

Length

588 amino acids

Sequence
(BLAST)

001: MAAATAMEPS SSISFTSSHL SNPSVVTNHQ SSSPNLEAAS LAKLSTDLEQ LLTSSDCDYT DAEITFEGET HAVGVHRCVL AARSKFFFDL FKKDRESEEK
101: KKPKYHIKDL LPHGHVGREA FLHFLNYIYT GKLKPFPVEV STCVDTGCAH DSCKPAIDFA VELMYASYTF KITELVSSFQ RRLCNYVEKS LVENVLPILL
201: VAFHCDLTQL LDQCVERVAR SDLDRFYIEK ELPLEVSEKI KKLRVKSTNT DEVADKLIER TGKVLKALDS DDVELVKLLL TESDTTLDQA NGLHYVVAYS
301: DPKVVAEVLA LDMADVNYRN SRGYTVLHYA AMRREPSIII SLLKKGANAS DFTFDGRSAV NICRRMTRPK DYYTKNAKGD EASKDRLCID ILEREIRRNP
401: LASGGGDTPT CSHSMPEDLQ MRFLYLEKRV GLAQLFFPTE ADVAMDIANV EGTSEFTGFP VPPPSNGATG NLTQVDLNET PYMQTKRLLT RMEALMKTVE
501: TGRRYFPSCS EVLDKYMDDY MDEDIPDMSH PEKGSVKERR WKRMRYKELK NDVKKAYNKD KQAKIARSCL SVSSPDSSLR GSLENQTT

Best Arabidopsis Sequence Match ( AT4G19660.1 )
(BLAST)

001: MAATAIEPSS SISFTSSHLS NPSPVVTTYH SAANLEELSS NLEQLLTNPD CDYTDAEIII EEEANPVSVH RCVLAARSKF FLDLFKKDKD SSEKKPKYQM
101: KDLLPYGNVG REAFLHFLSY IYTGRLKPFP IEVSTCVDSV CAHDSCKPAI DFAVELMYAS FVFQIPDLVS SFQRKLRNYV EKSLVENVLP ILLVAFHCDL
201: TQLLDQCIER VARSDLDRFC IEKELPLEVL EKIKQLRVKS VNIPEVEDKS IERTGKVLKA LDSDDVELVK LLLTESDITL DQANGLHYAV AYSDPKVVTQ
301: VLDLDMADVN FRNSRGYTVL HIAAMRREPT IIIPLIQKGA NASDFTFDGR SAVNICRRLT RPKDYHTKTS RKEPSKYRLC IDILEREIRR NPLVSGDTPT
401: CSHSMPEDLQ MRLLYLEKRV GLAQLFFPAE ANVAMDVANV EGTSECTGLL TPPPSNDTTE NLGKVDLNET PYVQTKRMLT RMKALMKTVE TGRRYFPSCY
501: EVLDKYMDQY MDEEIPDMSY PEKGTVKERR QKRMRYNELK NDVKKAYSKD KVARSCLSSS SPASSLREAL ENPT

Arabidopsis Description

NPR4NPR1-like protein 4 [Source:TAIR;Acc:AT4G19660]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.