CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02530
EES03778
KXG22247
KXG36997
KXG39494

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	EES02530	AT5G06960.1	21798944
AT5G45110.1	EES03778	AT5G06960.1	21798944
AT5G45110.1	KXG22247	AT5G06960.1	21798944
AT5G45110.1	KXG36997	AT5G06960.1	21798944
AT5G45110.1	KXG39494	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034944_P004	Maize	cytosol	69.73	91.65
Zm00001d013581_P001	Maize	cytosol	30.27	90.05
Os03t0667100-01	Rice	cytosol	76.09	77.25
TraesCS4D01G017500.1	Wheat	cytosol	74.75	75.0
TraesCS4A01G294400.1	Wheat	cytosol, plastid	75.25	74.88
TraesCS4B01G018900.2	Wheat	cytosol, plastid	75.08	74.71
HORVU4Hr1G003040.1	Barley	cytosol, plastid	73.58	74.7
GSMUA_Achr5P02120_001	Banana	cytosol	51.17	52.4
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	51.67	51.93
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	50.17	51.11
EES01524	Sorghum	plastid	50.84	48.95
KRH36735	Soybean	cytosol, plastid	47.99	48.64
KRH11740	Soybean	plastid	47.32	47.97
PGSC0003DMT400054660	Potato	cytosol, plastid	45.99	47.33
Solyc02g069310.2.1	Tomato	cytosol, plastid	45.65	46.99
CDY26398	Canola	plastid	43.65	46.44
Bra021949.1-P	Field mustard	plastid	43.65	46.44
PGSC0003DMT400002412	Potato	cytosol	44.48	46.26
CDX82577	Canola	plastid	41.47	45.76
CDY39410	Canola	plastid	41.64	45.6
Bra025093.1-P	Field mustard	plastid	41.64	45.6
Solyc07g044980.2.1	Tomato	nucleus	43.65	45.55
KRH73603	Soybean	cytosol, plastid	44.65	45.25
CDX78955	Canola	plastid	44.48	45.24
KRH14520	Soybean	cytosol, plastid	44.48	45.08
Bra013416.1-P	Field mustard	plastid	43.98	44.73
CDX99350	Canola	plastid	43.81	44.56
AT5G45110.1	Thale cress	cytosol, plastid	43.65	44.54
AT4G19660.2	Thale cress	cytosol, plastid	42.81	42.6
EES00131	Sorghum	cytosol	38.29	39.28
CDY36698	Canola	cytosol	30.94	36.35
EES16520	Sorghum	cytosol	20.4	25.42
EES09234	Sorghum	cytosol	20.4	25.21
OQU88196	Sorghum	cytosol	19.9	23.47

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.1	Gene3D:3.30.710.10	EntrezGene:8056746	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	UniProt:C5WQB3	EnsemblPlants:EER91108	ProteinID:EER91108	ProteinID:EER91108.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162
GO:GO:0031625	GO:GO:0042742	GO:GO:0042787	GO:GO:0043161	InterPro:IPR000210	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF11900	PFAM:PF12313
PFAM:PF12796	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF114
InterPro:SKP1/BTB/POZ_sf	SMART:SM00248	EnsemblPlantsGene:SORBI_3001G143000	SUPFAM:SSF48403	SUPFAM:SSF54695	unigene:Sbi.15823
UniParc:UPI0001A81FBD	RefSeq:XP_002464110.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:11466178..11470085

Molecular Weight (calculated)

66540.4 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.300

Length

598 amino acids

Sequence
(BLAST)

001: MEVSTISFSS PSSSPPSLSP SPPPSQQQQH QPRGATPADL EAVGLRRLSD NLQRLLDPAF LNCADAEIAL APAKGGGAVG VHRCILAARS AFFLHHFASL
101: PAPAGGGGER PRLELADLVP GGRHIGQDAL VPVLGYLYTG RLKSPPQEAT VCMDDACGHG TCRPAIDFVV ESMYAASGFQ ISELISLFQR RLSDFVSEAL
201: DEDVVPIIHV ASTCDLQDLL NQCIHRVAVS TLDSRYLEKE LPDDIYCRIK EIRRSTFHDE SSESAILDPE HDKRVRNILK ALDSDDVDLV GLLLKESTVT
301: LDDAFAIHYA AAYCEPKVFA ELLKLDSANV NRKSNSGYTP LHIACMRREP DIILSLVERG ASVLERTLDG RDALTICKRL TREKDCNRKL EKYEEKSKAY
401: LCIDILEQEL KRKSFILDPI SIEESIATPL LVDNFHMRLI NLENRVAFAR IFFPSEAKLV MRIAQADSTE EFAGITNFSK LKEVDLNETP TMQNRRLRER
501: LDALTKTVEL GRRYFPHCSD VLDKFLNEES TDLIFLETGT PEDQRVKRMR FSELKEDVRK AFTKDKAAVA AIASSASSSS SPRCEGRGRS NRKLRPSR

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.