Factsheet for Solyc07g044980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002412	Potato	cytosol	96.86	96.52
KRH14520	Soybean	cytosol, plastid	58.46	56.78
KRH73603	Soybean	cytosol, plastid	58.29	56.61
GSMUA_Achr5P02120_001	Banana	cytosol	55.5	54.45
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	56.02	53.95
Solyc02g069310.2.1	Tomato	cytosol, plastid	54.1	53.36
EES01524	Sorghum	plastid	52.18	48.15
Zm00001d012660_P002	Maize	cytosol	51.83	47.83
HORVU3Hr1G074640.4	Barley	cytosol, plastid	51.13	47.49
TraesCS3D01G302900.1	Wheat	cytosol, plastid	50.26	47.45
TraesCS3B01G337700.1	Wheat	plastid	50.09	47.13
Os01t0767900-01	Rice	plastid	52.01	46.93
TraesCS3A01G298800.1	Wheat	plastid	50.44	46.76
Os03t0667100-01	Rice	cytosol	47.12	45.84
Zm00001d034944_P004	Maize	cytosol	35.43	44.62
EER91108	Sorghum	plastid	45.55	43.65
HORVU4Hr1G003040.1	Barley	cytosol, plastid	43.63	42.44
TraesCS4A01G294400.1	Wheat	cytosol, plastid	44.15	42.1
TraesCS4D01G017500.1	Wheat	cytosol	43.63	41.95
Zm00001d013581_P001	Maize	cytosol	14.66	41.79
TraesCS4B01G018900.2	Wheat	cytosol, plastid	43.8	41.76
Solyc07g040690.2.1	Tomato	cytosol	40.49	40.28
Solyc04g040220.2.1	Tomato	cytosol	23.21	28.54
Solyc10g079460.1.1	Tomato	cytosol	22.86	26.52
Solyc10g079750.1.1	Tomato	cytosol	22.34	26.23
Solyc05g018160.1.1	Tomato	cytosol	10.65	21.79

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.1	Gene3D:3.30.710.10	EMBL:AY640380	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042787	GO:GO:0043161	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12313	PFAM:PF12796
PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF78	UniProt:Q6GUF1
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	EnsemblPlantsGene:Solyc07g044980.2
EnsemblPlants:Solyc07g044980.2.1	UniParc:UPI00003B4C73	SEG:seg	:	:	:

Description

NIM1-like protein 2 [Source:UniProtKB/TrEMBL;Acc:Q6GUF1]

Coordinates

chr7:-:58023185..58027908

Molecular Weight (calculated)

64202.9 Da

IEP (calculated)

6.261

GRAVY (calculated)

-0.355

Length

573 amino acids

Sequence
(BLAST)

001: MESGHESFAT SSNVSNECSS PQEPGPNVDH LSNLCGSLEK LLLNPEYDYS DAEIVVEGIN VGVNRCILAA RSQFFHEKFK EKNENSLKNE KPKYLLKDLV
101: CVSSIGYEVF MVLLNYLYTG KIKSSPSEVS SCVDNACAHD ACRPAINYAV ELMYASSTFQ IKELVMFVER YLDNFVDKAT PEDVIPILLV AFHRKSNQLL
201: EHCIQRVARS DLDNATLEKE LPHEVLTDIK SRRLKSRQGT EQESLDSLSE KRIRRILKAL ESDDIELLTL LLEESNVTLN DACALHYAAA YCNSKVVNEV
301: LELGLGADVN LQNSRGYNVL HVAARRKEPS IIMGLLAKGA SVLDTTRDGH TALSICRRLT RLKDYNDPPK QGKVTNKDRL CIDVLEREMI RNPMIGSMCS
401: SSLVLADELL MRLLLFENRV ALARMLFPQE AMLAMEIAHA DSTAEFTGLS ATNGLCKNPG GVDLNKLPSE QVKRLQDRLG ALLKTVDTGR RFFPNCSEVL
501: DRLLEDDKLD SLMLESGTPE EQRSKKMRYT ELKDEVMEAF KKDKAEKNWA GFSTSSSSSC SPKTNVSHKN RKK

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.