Factsheet for Solyc02g069310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008730.2.1
Solyc11g064950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	Solyc01g008730.2.1	AT5G06960.1	21798944
AT5G45110.1	Solyc11g064950.1.1	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054660	Potato	cytosol, plastid	95.01	95.01
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	72.81	72.06
KRH36735	Soybean	cytosol, plastid	70.4	69.32
KRH11740	Soybean	plastid	69.88	68.81
GSMUA_Achr5P02120_001	Banana	cytosol	61.1	60.79
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	61.62	60.17
CDY26398	Canola	plastid	55.94	57.83
Bra021949.1-P	Field mustard	plastid	55.42	57.3
CDY39410	Canola	plastid	52.84	56.23
CDX82577	Canola	plastid	52.32	56.09
Bra025093.1-P	Field mustard	plastid	52.67	56.04
AT5G45110.1	Thale cress	cytosol, plastid	56.28	55.8
Solyc07g044980.2.1	Tomato	nucleus	53.36	54.1
CDX78955	Canola	plastid	54.56	53.91
CDX99350	Canola	plastid	54.39	53.74
Bra013416.1-P	Field mustard	plastid	54.04	53.4
Zm00001d012660_P002	Maize	cytosol	56.97	53.3
EES01524	Sorghum	plastid	56.8	53.14
TraesCS3B01G337700.1	Wheat	plastid	55.42	52.87
TraesCS3D01G302900.1	Wheat	cytosol, plastid	55.08	52.72
HORVU3Hr1G074640.4	Barley	cytosol, plastid	55.59	52.35
TraesCS3A01G298800.1	Wheat	plastid	55.42	52.1
Os01t0767900-01	Rice	plastid	56.45	51.65
AT4G19660.2	Thale cress	cytosol, plastid	53.36	51.58
Os03t0667100-01	Rice	cytosol	48.36	47.71
Zm00001d034944_P004	Maize	cytosol	36.83	47.03
EER91108	Sorghum	plastid	46.99	45.65
Zm00001d013581_P001	Maize	cytosol	15.66	45.27
HORVU4Hr1G003040.1	Barley	cytosol, plastid	45.44	44.82
TraesCS4A01G294400.1	Wheat	cytosol, plastid	45.96	44.43
TraesCS4B01G018900.2	Wheat	cytosol, plastid	45.78	44.26
TraesCS4D01G017500.1	Wheat	cytosol	45.27	44.13
CDY36698	Canola	cytosol	38.55	44.01
Solyc07g040690.2.1	Tomato	cytosol	42.0	42.36
Solyc04g040220.2.1	Tomato	cytosol	22.55	28.11
Solyc10g079750.1.1	Tomato	cytosol	23.24	27.66
Solyc10g079460.1.1	Tomato	cytosol	23.41	27.53
Solyc05g018160.1.1	Tomato	cytosol	10.33	21.43

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.1	Gene3D:3.30.710.10	EMBL:AY640379	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607
GO:GO:0009719	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042742	GO:GO:0042787	GO:GO:0043161	GO:GO:2000022	InterPro:IPR000210	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	InterPro:NPR1/NIM1-like_C	PFAM:PF00651	PFAM:PF12313	PFAM:PF12796
PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF124	UniProt:Q6GUF2
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	EnsemblPlantsGene:Solyc02g069310.2
EnsemblPlants:Solyc02g069310.2.1	UniParc:UPI00003B4C72	SEG:seg	:	:	:

Description

NIM1-like protein 1 [Source:UniProtKB/TrEMBL;Acc:Q6GUF2]

Coordinates

chr2:+:39239910..39245302

Molecular Weight (calculated)

64231.0 Da

IEP (calculated)

6.456

GRAVY (calculated)

-0.157

Length

581 amino acids

Sequence
(BLAST)

001: MASSAEPSSS ISFTSTSNTS NGSIGIGQNT CACGGSETGS SYEIISLSKL SNNLEQLLLD SSSEFSDAEI VVEGVSLGVH RCILAARSSF FRDLFRKRNG
101: NCGKEGKPSY SMIDILPCGK VGYEAFLTFL SYLYSGKLKH FPPEASTCVN SLCSHDSCRP AINFHVELMY ASFVFQVPEL VSLFLRHLFS FVGKALVEDV
201: IPILGVAFHC QMSELLTHCV DRVARSDLES TCIEKEVPFK VAESIKLSRL KCQGDESMVL TVDPLHEKRK NRIYKALDSD DVELVKLLLN ESDISLDGAY
301: ALHYAVAYCD PKVVAEVLGL GVANVNLRNA RGYTVLHIAA MRKEPSIIVS LLTKGAHASE ITLDGQSAVS LCRRLTRPKE YHAKTEQGQE ANKDRVCIDV
401: LEREMRRNPM TGDALFSSPM LADDLPMKLL YLENRVAFAR LLFPLEAKLA MEIATAETTA EFADHLASKA SSGILREVDL NETPIMQKER LSKTVELGKC
501: YFPHCSEVLD KFMEDDLPDL FFLEKGTPEE QKIKRRRFKE LKDDVQRAFN KDKAGLHRSG SSSSSSSTTF NDGASVKARN L

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.