Factsheet for PGSC0003DMT400054660

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400024428
PGSC0003DMT400026710

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	PGSC0003DMT400024428	AT5G06960.1	21798944
AT5G45110.1	PGSC0003DMT400026710	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069310.2.1	Tomato	cytosol, plastid	95.01	95.01
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	73.32	72.57
KRH36735	Soybean	cytosol, plastid	69.88	68.81
KRH11740	Soybean	plastid	69.54	68.47
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	62.31	60.84
GSMUA_Achr5P02120_001	Banana	cytosol	61.1	60.79
CDY26398	Canola	plastid	55.42	57.3
Bra021949.1-P	Field mustard	plastid	54.91	56.76
CDY39410	Canola	plastid	52.84	56.23
CDX82577	Canola	plastid	52.32	56.09
Bra025093.1-P	Field mustard	plastid	52.67	56.04
AT5G45110.1	Thale cress	cytosol, plastid	55.94	55.46
PGSC0003DMT400002412	Potato	cytosol	54.39	54.96
Zm00001d012660_P002	Maize	cytosol	57.31	53.62
CDX78955	Canola	plastid	54.22	53.57
TraesCS3B01G337700.1	Wheat	plastid	56.11	53.53
EES01524	Sorghum	plastid	57.14	53.46
CDX99350	Canola	plastid	54.04	53.4
TraesCS3D01G302900.1	Wheat	cytosol, plastid	55.77	53.38
Bra013416.1-P	Field mustard	plastid	53.7	53.06
HORVU3Hr1G074640.4	Barley	cytosol, plastid	56.28	53.0
TraesCS3A01G298800.1	Wheat	plastid	56.11	52.75
Os01t0767900-01	Rice	plastid	56.8	51.97
AT4G19660.2	Thale cress	cytosol, plastid	53.01	51.25
Os03t0667100-01	Rice	cytosol	48.36	47.71
Zm00001d034944_P004	Maize	cytosol	37.35	47.69
EER91108	Sorghum	plastid	47.33	45.99
Zm00001d013581_P001	Maize	cytosol	15.83	45.77
HORVU4Hr1G003040.1	Barley	cytosol, plastid	45.09	44.48
TraesCS4A01G294400.1	Wheat	cytosol, plastid	45.78	44.26
TraesCS4B01G018900.2	Wheat	cytosol, plastid	45.61	44.09
CDY36698	Canola	cytosol	38.55	44.01
TraesCS4D01G017500.1	Wheat	cytosol	45.09	43.96
PGSC0003DMT400027591	Potato	cytosol	23.06	29.07
PGSC0003DMT400076710	Potato	cytosol	23.24	27.72
PGSC0003DMT400021076	Potato	cytosol	23.06	27.35

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102590218	MapMan:11.8.2.1	Gene3D:3.30.710.10	ProteinID:AAU21298	ProteinID:AAU21298.1
EMBL:AY615281	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
UniProt:M1BWP0	InterPro:NPR1/NIM1-like_C	PFAM:PF00651	PFAM:PF12313	PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400021210
PGSC:PGSC0003DMG400021210	EnsemblPlants:PGSC0003DMT400054660	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413
PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695
UniParc:UPI000294AC1B	RefSeq:XP_006353069.1	SEG:seg	:	:	:

Description

NIM1 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400021210]

Coordinates

chr2:+:28445827..28451364

Molecular Weight (calculated)

64364.0 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.213

Length

581 amino acids

Sequence
(BLAST)

001: MGSSAEPSSS ISFTSTSNTS NGSIGIGQNT CACGGSETGS SNEIISLSKL SNNLEQLLLD SSSEFSDAEI VVEGDSLGVH RCILAARSSF FRDLFRNENG
101: NCGKEGKPSY SMIDILPCGK VGYEAFRTFL SYLYSGKLKH FPPEASTCVD SLCSHDFCRP AINFHVELMY ASFVFQVPEL VSLFLRRLIS FVGKAVLEDV
201: IPILGVAFHC QLSELLTHCV DRVARSDLES TCIEKEVPFK VAESIKLSQL KCQGDESKVL PVDPLHEKRK NRIYKALDSD DVELVKLLLN ESDISLDGAY
301: ALHYAVAYCD PKVVTEVLGL GVANVNLRNT RGYTVLHIAA MRKEPSIIVS LLTKGAHASE ITLDGQSAVS ICRRLTRPKE YHAKTEQGQE ANKDRVCIDV
401: LEREMRRNPM TRDALFSSPM LADDLPMKLL YLENRVAFAR LLFPLEAKLA MEIATAETTA EFADHLASKG SSGNLREVDL NETPIMQKER LSKTVELGKR
501: YFPHCSQVLD KFMEDDLPDF IFLEKGTPEE QKIKRRRFKE LKDDVQRAFN KDKAGLHCSG LSSSSSSTTF KDGASVKARN L

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.