Factsheet for PGSC0003DMT400021076

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009142
PGSC0003DMT400009146
PGSC0003DMT400092162

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	PGSC0003DMT400009142	AT3G51180.1	21798944
AT2G41370.1	PGSC0003DMT400009146	AT3G51180.1	21798944
AT2G41370.1	PGSC0003DMT400092162	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079460.1.1	Tomato	cytosol	95.31	94.53
PGSC0003DMT400027591	Potato	cytosol	76.33	81.13
PGSC0003DMT400076710	Potato	cytosol	77.35	77.82
CDX79940	Canola	cytosol	50.0	77.29
Bra004617.1-P	Field mustard	cytosol	49.8	76.97
VIT_08s0007g05740.t01	Wine grape	cytosol	76.73	76.73
AT3G57130.1	Thale cress	cytosol	73.06	76.66
AT2G41370.1	Thale cress	cytosol	75.92	75.76
CDX76040	Canola	cytosol	44.9	75.6
KRH66789	Soybean	cytosol	75.1	75.56
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	75.1	75.56
Bra014645.1-P	Field mustard	cytosol	44.69	75.26
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	74.29	74.74
CDY35774	Canola	cytosol	44.29	74.57
CDY23854	Canola	cytosol	73.06	74.43
KRH72058	Soybean	cytosol	71.43	73.53
Bra016938.1-P	Field mustard	cytosol	73.06	73.51
Bra007306.1-P	Field mustard	cytosol	69.18	73.38
CDX72067	Canola	cytosol	69.18	73.22
CDY06130	Canola	cytosol	68.98	73.16
CDY30971	Canola	cytosol	67.76	72.97
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	68.78	72.94
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	68.57	72.73
GSMUA_Achr5P16220_001	Banana	cytosol	64.9	72.11
GSMUA_Achr11P...	Banana	cytosol	62.65	71.06
GSMUA_Achr5P08160_001	Banana	cytosol	61.22	70.26
GSMUA_Achr3P08710_001	Banana	cytosol	60.41	69.48
GSMUA_AchrUn_...	Banana	cytosol	59.18	69.21
Zm00001d011878_P001	Maize	cytosol	68.98	68.98
GSMUA_Achr8P22070_001	Banana	cytosol	57.35	67.71
OQU88196	Sorghum	cytosol	69.59	67.26
Os01t0948900-01	Rice	cytosol	45.92	66.77
Zm00001d042111_P001	Maize	cytosol	69.18	66.73
TraesCS3A01G489000.1	Wheat	cytosol	69.18	65.95
HORVU3Hr1G106880.5	Barley	cytosol	68.98	65.89
TraesCS3D01G484100.1	Wheat	cytosol	68.57	65.75
TraesCS3B01G537400.1	Wheat	cytosol	68.78	65.56
GSMUA_AchrUn_...	Banana	cytosol	55.92	61.16
EES16520	Sorghum	cytosol	57.14	58.33
Zm00001d023246_P001	Maize	cytosol	56.33	58.11
Zm00001d052468_P002	Maize	cytosol	55.71	57.96
Zm00001d004966_P001	Maize	cytosol	55.51	57.51
TraesCS5A01G134700.2	Wheat	cytosol	57.76	57.4
TraesCS5B01G133700.1	Wheat	cytosol	57.76	57.4
TraesCS5D01G139600.1	Wheat	cytosol	57.76	57.4
Os11t0141900-00	Rice	cytosol	57.55	57.09
EES09234	Sorghum	cytosol	56.12	56.82
Os12t0138500-01	Rice	cytosol	35.92	54.15
CDY33841	Canola	cytosol	9.59	47.47
PGSC0003DMT400054660	Potato	cytosol, plastid	27.35	23.06
PGSC0003DMT400002412	Potato	cytosol	26.33	22.43

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102596778	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1AEK4	InterPro:NPR_central_dom	PFAM:PF00651
PFAM:PF11900	PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400008160	PGSC:PGSC0003DMG400008160	EnsemblPlants:PGSC0003DMT400021076	PFscan:PS50088
PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI000294B972	RefSeq:XP_006351262.1	SEG:seg

Description

BOP/NPR1/NIM1-like regulatory protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008160]

Coordinates

chr10:-:58316421..58318888

Molecular Weight (calculated)

54291.9 Da

IEP (calculated)

6.772

GRAVY (calculated)

-0.234

Length

490 amino acids

Sequence
(BLAST)

001: MTPEDSLRTL SLDYLNLLIN GQAFSDVTFS VEGRLVHAHR CILAARSLFF RKFFCGPESS SVSGPRLGPF GAGAGLASSP RGTTSCSQVI PVNTVGYEVF
101: LLMLQFLYSG QVSIVPQKHE PRPNCGERSC WHTHCTAAVD LALDTLTAAR SFGVEQLALL TQKHLISMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLI
201: AKSGLPPEIL TKHLPIDVVA KIEDLRLKSS ISRRSLIPHH HHHHHQMSSN IELEDQKIRR MRRALDSSDV ELVKLMVMGE GLNLDESLAL HYAVENCSRE
301: VVKALLELGA AEVNYQAGPS CKSPLHLAAE MVSPDMVAVL LDHHADPNIQ TVDGITPLDI LRTLTSDFLF KGAIPGLTHI EPNKLRLCLE LVQSAAMVIS
401: REEGEANNNQ SSENMYTHVR EDHSSSTSSG NNNLNLDSRM VYLNLGANVA TTHHQMACKM NNNEGDHDCS RSHNNQNPST MYHHHHSHEY

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.