Factsheet for TraesCS5D01G139600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G492200.1
TraesCS2B01G520300.1
TraesCS2D01G492400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	TraesCS2A01G492200.1	AT3G51180.1	21798944
AT2G41370.1	TraesCS2B01G520300.1	AT3G51180.1	21798944
AT2G41370.1	TraesCS2D01G492400.1	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G134700.2	Wheat	cytosol	99.59	99.59
TraesCS5B01G133700.1	Wheat	cytosol	99.59	99.59
Zm00001d023246_P001	Maize	cytosol	88.44	91.79
EES16520	Sorghum	cytosol	89.25	91.67
Os11t0141900-00	Rice	cytosol	91.68	91.5
Os12t0138500-01	Rice	cytosol	59.03	89.54
Zm00001d004966_P001	Maize	cytosol	83.77	87.31
GSMUA_AchrUn_...	Banana	cytosol	54.36	63.96
GSMUA_Achr3P08710_001	Banana	cytosol	54.16	62.68
GSMUA_Achr5P08160_001	Banana	cytosol	54.16	62.53
GSMUA_Achr8P22070_001	Banana	cytosol	51.72	61.45
VIT_08s0007g05740.t01	Wine grape	cytosol	61.05	61.43
KRH72058	Soybean	cytosol	59.23	61.34
PGSC0003DMT400027591	Potato	cytosol	57.2	61.17
CDY23854	Canola	cytosol	58.82	60.29
Solyc04g040220.2.1	Tomato	cytosol	56.59	59.87
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	59.03	59.75
TraesCS3D01G484100.1	Wheat	cytosol	61.87	59.69
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	58.82	59.55
KRH66789	Soybean	cytosol	58.82	59.55
AT3G57130.1	Thale cress	cytosol	56.19	59.31
Bra007306.1-P	Field mustard	cytosol	55.17	58.87
AT2G41370.1	Thale cress	cytosol	58.62	58.86
Bra016938.1-P	Field mustard	cytosol	58.01	58.73
CDY06130	Canola	cytosol	54.97	58.66
CDX72067	Canola	cytosol	54.97	58.53
Solyc10g079750.1.1	Tomato	cytosol	57.81	58.4
PGSC0003DMT400076710	Potato	cytosol	57.4	58.11
PGSC0003DMT400021076	Potato	cytosol	57.4	57.76
CDY30971	Canola	cytosol	53.14	57.58
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	53.96	57.58
CDX79940	Canola	cytosol	36.92	57.41
Bra004617.1-P	Field mustard	cytosol	36.92	57.41
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	53.75	57.36
Solyc10g079460.1.1	Tomato	cytosol	57.4	57.29
GSMUA_AchrUn_...	Banana	cytosol	50.91	56.03
Bra014645.1-P	Field mustard	cytosol	32.45	54.98
CDX76040	Canola	cytosol	32.45	54.98
CDY35774	Canola	cytosol	32.25	54.64
Solyc05g018160.1.1	Tomato	cytosol	23.94	42.14
CDY33841	Canola	cytosol	7.3	36.36
TraesCS3D01G107500.1	Wheat	cytosol	24.75	21.03
TraesCS7D01G019000.1	Wheat	cytosol, mitochondrion	20.08	20.33
TraesCS3D01G302900.1	Wheat	cytosol, plastid	24.54	19.93
TraesCS4D01G017500.1	Wheat	cytosol	23.53	19.46

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12796	PFscan:PS50088
PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF113	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	EnsemblPlantsGene:TraesCS5D01G139600	EnsemblPlants:TraesCS5D01G139600.1	TIGR:cd00204
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:222737823..222740651

Molecular Weight (calculated)

51725.0 Da

IEP (calculated)

6.562

GRAVY (calculated)

-0.053

Length

493 amino acids

Sequence
(BLAST)

001: MSSEDSLKSL SLDYLNLLIN GQAFSDVAFS VEGRLVHAHR CVLAARSLFF RKLFCGLDPS HQPPPPPLNW PNAGGGSGGG GGGGSRGGSG GAPATPELVI
101: PVSSIRYEVL VLVLQFLYSG QASVAAPKSG PLPGCGARGC WHTRCGAAVD LALDTLAAAR SFGVEQLALL VQKQLESMVK EASVDDVMKV LMASRKFEMQ
201: ELWATCSHLV ARSGLSADLL AKHLPIDVVA KIEEIRAKSP LAGGGASQPR SPFLTHHYLP INNGPSSAAD RDHKIRRMRR ALDAADIELV KLMVMGEGLD
301: LDDALAVHYA VQHCNRDVVK ALLELGAADV NSRAGPTGKT PLHLAAEMVS PDMVSVLLDH HADPNARTLD GVTPLDVLRG LTSEFLFKGA VPGLTHIEPN
401: KLRLCLELVQ SAVMVTTRDD GGGGDGGGAG GSDGGNFGRG DADDSLVSLT MNSTLMYQGQ EMAAPPVAGE ARNKGNNNGR ASPSNLYFPN GFP

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.