CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28782
KRH28783
KRH69800
KRH69802
KRH76672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	KRH28782	AT3G51180.1	21798944
AT2G41370.1	KRH28783	AT3G51180.1	21798944
AT2G41370.1	KRH69800	AT3G51180.1	21798944
AT2G41370.1	KRH69802	AT3G51180.1	21798944
AT2G41370.1	KRH76672	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95113	Soybean	cytosol	70.02	97.99
KRH72058	Soybean	cytosol	81.52	83.4
VIT_08s0007g05740.t01	Wine grape	cytosol	82.55	82.04
CDX79940	Canola	cytosol	52.36	80.44
Bra004617.1-P	Field mustard	cytosol	52.16	80.13
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	79.67	79.67
AT2G41370.1	Thale cress	cytosol	79.88	79.23
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	79.06	79.06
CDY23854	Canola	cytosol	77.62	78.59
PGSC0003DMT400027591	Potato	cytosol	73.92	78.09
Bra016938.1-P	Field mustard	cytosol	78.03	78.03
AT3G57130.1	Thale cress	cytosol	74.54	77.73
GSMUA_Achr5P16220_001	Banana	cytosol	69.61	76.87
Solyc04g040220.2.1	Tomato	cytosol	73.31	76.61
CDY06130	Canola	cytosol	71.87	75.76
Bra007306.1-P	Field mustard	cytosol	71.87	75.76
CDX72067	Canola	cytosol	71.87	75.59
CDX76040	Canola	cytosol	44.97	75.26
PGSC0003DMT400021076	Potato	cytosol	75.56	75.1
PGSC0003DMT400076710	Potato	cytosol	74.95	74.95
GSMUA_AchrUn_...	Banana	cytosol	64.48	74.94
Bra014645.1-P	Field mustard	cytosol	44.76	74.91
Solyc10g079460.1.1	Tomato	cytosol	75.56	74.49
Solyc10g079750.1.1	Tomato	cytosol	74.54	74.39
Bra003268.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	70.43	74.24
CDY35774	Canola	cytosol	44.35	74.23
GSMUA_Achr11P...	Banana	cytosol	65.71	74.07
GSMUA_Achr3P08710_001	Banana	cytosol	64.68	73.94
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	69.82	73.59
GSMUA_Achr5P08160_001	Banana	cytosol	64.27	73.3
CDY30971	Canola	cytosol	68.17	72.97
GSMUA_Achr8P22070_001	Banana	cytosol	60.99	71.57
Zm00001d011878_P001	Maize	cytosol	69.4	68.98
Os01t0948900-01	Rice	cytosol	47.23	68.25
OQU88196	Sorghum	cytosol	70.23	67.46
Zm00001d042111_P001	Maize	cytosol	70.23	67.32
TraesCS3A01G489000.1	Wheat	cytosol	70.64	66.93
TraesCS3D01G484100.1	Wheat	cytosol	70.02	66.73
TraesCS3B01G537400.1	Wheat	cytosol	70.23	66.54
HORVU3Hr1G106880.5	Barley	cytosol	70.02	66.47
GSMUA_AchrUn_...	Banana	cytosol	58.93	64.06
EES16520	Sorghum	cytosol	59.55	60.42
Zm00001d052468_P002	Maize	cytosol	58.32	60.3
Zm00001d023246_P001	Maize	cytosol	58.52	60.0
Os11t0141900-00	Rice	cytosol	60.16	59.31
Zm00001d004966_P001	Maize	cytosol	57.49	59.2
EES09234	Sorghum	cytosol	58.73	59.09
TraesCS5A01G134700.2	Wheat	cytosol	59.55	58.82
TraesCS5B01G133700.1	Wheat	cytosol	59.55	58.82
TraesCS5D01G139600.1	Wheat	cytosol	59.55	58.82
Solyc05g018160.1.1	Tomato	cytosol	33.47	58.21
Os12t0138500-01	Rice	cytosol	38.6	57.85
KRH73603	Soybean	cytosol, plastid	28.95	23.9
KRH36735	Soybean	cytosol, plastid	28.54	23.56
KRH14520	Soybean	cytosol, plastid	28.34	23.39
KRH11740	Soybean	plastid	28.13	23.22
KRH37416	Soybean	cytosol	26.69	22.34

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100783294	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	EMBL:ACUP02002011	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G128600	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009864
GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787
GO:GO:0043161	UniProt:I1JN61	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
EnsemblPlants:KRH66789	ProteinID:KRH66789	ProteinID:KRH66789.1	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900
PFAM:PF12796	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI0002339D5A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:34350594..34354259

Molecular Weight (calculated)

53346.7 Da

IEP (calculated)

6.625

GRAVY (calculated)

-0.200

Length

487 amino acids

Sequence
(BLAST)

001: MSLEESLRSL SLDYLNLLIN GQAFSDVTFS VEGRLVHAHR CILAARSLFF RKFFCGPDAP CGLDPAGPRG VNSSRSGVIP VNSVGYEVFL LMLQFLYSGQ
101: VSIVPQKHEA RPNCGERGCW HTHCTSAVDL ALDTLAAARY FGVEPLALLT QKQLASMVEK ASIEDVMKVL LASRKQDMQQ LWATCSHLVA KSGLPPEVLA
201: KHLPIDIVAK IEELRLKSSL ARRSLVPSHH HHHHHPHHHA AAALDLEDQK IRRMRRALDS SDVELVKLMV MGEGLNLDEA LALPYAVENC SREVVKALLE
301: LGAADVNYPS GPAGKTPLHI AAEMVSPDMV AVLLDHHADP NVRTVDGVTP LDILRTLTSD FLFKGAVPGL THIEPNKLRL CLELVQSAAL VMSREEGNNA
401: NNNNNGPHSS SSAAPIYPPP MNEDHNNNNN SSSSSGNNNI GNLNLDSRLV YLNLGATASM SSRLDNAEDE REAMNQNMYH HHHSHDF

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.