CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73744
CDX77980

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41370.1	CDX73744	AT3G51180.1	21798944
AT2G41370.1	CDX77980	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	98.97	98.97
Bra016938.1-P	Field mustard	cytosol	98.77	98.77
CDX79940	Canola	cytosol	61.6	94.64
CDY23854	Canola	cytosol	92.61	93.76
AT2G41370.1	Thale cress	cytosol	94.25	93.48
CDX76040	Canola	cytosol	47.64	79.73
KRH66789	Soybean	cytosol	79.06	79.06
KRH72058	Soybean	cytosol	77.0	78.78
CDY35774	Canola	cytosol	47.02	78.69
VIT_08s0007g05740.t01	Wine grape	cytosol	78.64	78.16
CDY06130	Canola	cytosol	73.92	77.92
CDX72067	Canola	cytosol	73.92	77.75
PGSC0003DMT400027591	Potato	cytosol	73.31	77.44
PGSC0003DMT400076710	Potato	cytosol	76.18	76.18
Solyc04g040220.2.1	Tomato	cytosol	72.69	75.97
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	71.87	75.76
CDY30971	Canola	cytosol	70.64	75.6
Solyc10g079750.1.1	Tomato	cytosol	75.56	75.41
PGSC0003DMT400021076	Potato	cytosol	74.74	74.29
Solyc10g079460.1.1	Tomato	cytosol	74.54	73.48
GSMUA_AchrUn_...	Banana	cytosol	63.04	73.27
GSMUA_Achr5P16220_001	Banana	cytosol	66.12	73.02
GSMUA_Achr5P08160_001	Banana	cytosol	63.86	72.83
GSMUA_Achr11P...	Banana	cytosol	63.86	71.99
GSMUA_Achr3P08710_001	Banana	cytosol	62.83	71.83
GSMUA_Achr8P22070_001	Banana	cytosol	58.73	68.92
Zm00001d011878_P001	Maize	cytosol	69.2	68.78
Os01t0948900-01	Rice	cytosol	47.43	68.55
OQU88196	Sorghum	cytosol	69.82	67.06
TraesCS3D01G484100.1	Wheat	cytosol	70.02	66.73
Zm00001d042111_P001	Maize	cytosol	69.4	66.54
TraesCS3A01G489000.1	Wheat	cytosol	70.02	66.34
TraesCS3B01G537400.1	Wheat	cytosol	70.02	66.34
HORVU3Hr1G106880.5	Barley	cytosol	69.4	65.89
GSMUA_AchrUn_...	Banana	cytosol	58.32	63.39
Zm00001d023246_P001	Maize	cytosol	59.34	60.84
EES16520	Sorghum	cytosol	59.96	60.83
Zm00001d052468_P002	Maize	cytosol	58.73	60.72
Solyc05g018160.1.1	Tomato	cytosol	34.29	59.64
Zm00001d004966_P001	Maize	cytosol	57.7	59.41
EES09234	Sorghum	cytosol	58.73	59.09
Os11t0141900-00	Rice	cytosol	59.75	58.91
TraesCS5D01G139600.1	Wheat	cytosol	59.55	58.82
TraesCS5B01G133700.1	Wheat	cytosol	59.55	58.82
TraesCS5A01G134700.2	Wheat	cytosol	59.55	58.82
Os12t0138500-01	Rice	cytosol	38.81	58.15
CDY33841	Canola	cytosol	9.65	47.47
CDY26398	Canola	plastid	26.08	22.6
CDX78955	Canola	plastid	26.69	22.11
CDX99350	Canola	plastid	26.49	21.94
CDX82577	Canola	plastid	24.23	21.77
CDY39410	Canola	plastid	24.02	21.43
CDY34413	Canola	cytosol	24.23	20.74
CDY25575	Canola	cytosol	23.61	20.18
CDX94376	Canola	cytosol	22.79	18.32
CDX89364	Canola	cytosol	22.79	18.26
CDY50004	Canola	cytosol	22.18	18.12
CDX89362	Canola	cytosol	22.18	17.85
CDX94371	Canola	cytosol	21.97	17.69
CDY36698	Canola	cytosol	17.25	16.5
CDY14314	Canola	nucleus	17.86	10.33

Protein Annotations

Gene3D:1.25.40.20	MapMan:15.5.4.7.2	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	EnsemblPlants:CDY06929	ProteinID:CDY06929	ProteinID:CDY06929.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00123228001	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12796	PFscan:PS50088	PFscan:PS50097
PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF116	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF54695	UniPathway:UPA00143	UniParc:UPI0004EEF952	SEG:seg	:

Description

BnaA04g23860D

Coordinates

chrLK031974:+:263299..265296

Molecular Weight (calculated)

53704.0 Da

IEP (calculated)

6.687

GRAVY (calculated)

-0.296

Length

487 amino acids

Sequence
(BLAST)

001: MSSLEESLRS MSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDQ PQSCIDPTRH GSVPASPTRG SQAPAGVIPV NSVGYEVFLL
101: LLQFLYSGQV SIVPQKHEPR PNCGERGCWH THCSAAVDLA LDTLAASRYF GVEQLALLTQ KQLASMVEKA SIEDVMKVLI ASRKQDMQQL WSTCSHLVAK
201: SGLPPEILAK HLTIDVVAKI EEIRLKTSIS RRSLMPHNHH HDLTVAQDLE DQKIRRMRRA LDSSDVELVK LMVMGEGLNL DESLALHYAV ESCSREVVKA
301: LLELGAADVN YPAGPAGKTP LHIAAEMVSP DMVAVLLDHH ADPNVRTVGG ITPLDILRTL TSDFLFKGAV PGLTHIEPNK LRLCLELVQS AAMVISREEG
401: NNSNNNNNDY NNPSYPQMNE EHNSGSSGGS NNNLDSRLVY LNLGAGTGQM GQGRDHGDDQ NSQREGMSRH NHHHHHDPST MYHQHHF

Best Arabidopsis Sequence Match ( AT2G41370.1 )
(BLAST)

001: MSNLEESLRS LSLDFLNLLI NGQAFSDVTF SVEGRLVHAH RCILAARSLF FRKFFCGTDS PQPVTGIDPT QHGSVPASPT RGSTAPAGII PVNSVGYEVF
101: LLLLQFLYSG QVSIVPQKHE PRPNCGERGC WHTHCSAAVD LALDTLAASR YFGVEQLALL TQKQLASMVE KASIEDVMKV LIASRKQDMH QLWTTCSHLV
201: AKSGLPPEIL AKHLPIDVVT KIEELRLKSS IARRSLMPHN HHHDLSVAQD LEDQKIRRMR RALDSSDVEL VKLMVMGEGL NLDESLALHY AVESCSREVV
301: KALLELGAAD VNYPAGPAGK TPLHIAAEMV SPDMVAVLLD HHADPNVRTV GGITPLDILR TLTSDFLFKG AVPGLTHIEP NKLRLCLELV QSAAMVISRE
401: EGNNSNNQNN DNNTGIYPHM NEEHNSGSSG GSNNNLDSRL VYLNLGAGTG QMGPGRDQGD DHNSQREGMS RHHHHHQDPS TMYHHHHQHH F

Arabidopsis Description

NPR5Regulatory protein NPR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.