CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94376	Canola	cytosol	69.97	68.81
CDX89364	Canola	cytosol	69.97	68.59
CDY34413	Canola	cytosol	62.25	65.2
CDY25575	Canola	cytosol	62.08	64.91
CDX94371	Canola	cytosol	56.54	55.7
CDX89362	Canola	cytosol	55.7	54.88
Solyc07g040690.2.1	Tomato	cytosol	50.5	52.26
VIT_11s0016g01990.t01	Wine grape	cytosol	50.67	51.71
CDY14314	Canola	nucleus	71.48	50.59
GSMUA_Achr7P09190_001	Banana	cytosol	47.32	49.04
GSMUA_Achr2P16670_001	Banana	cytosol	46.48	47.43
KRH37416	Soybean	cytosol	46.31	47.42
TraesCS3A01G105400.1	Wheat	cytosol	43.62	45.06
Os01t0194300-01	Rice	cytosol	43.79	44.85
TraesCS3B01G123800.1	Wheat	cytosol	42.79	44.19
EES00131	Sorghum	cytosol	42.79	43.74
GSMUA_Achr6P00950_001	Banana	nucleus	46.14	43.65
Zm00001d039469_P001	Maize	cytosol	42.62	43.57
GSMUA_AchrUn_...	Banana	cytosol	41.95	43.48
TraesCS3D01G107500.1	Wheat	cytosol	42.28	43.45
TraesCS7D01G019000.1	Wheat	cytosol, mitochondrion	35.23	43.12
GSMUA_Achr8P05490_001	Banana	cytosol	41.95	43.03
TraesCS4A01G470500.1	Wheat	cytosol	35.23	42.94
HORVU3Hr1G019230.6	Barley	cytosol	42.28	42.14
GSMUA_Achr3P25880_001	Banana	cytosol	39.6	41.55
TraesCS7A01G021800.1	Wheat	cytosol, plastid	35.91	38.28
CDX82577	Canola	plastid	33.22	36.53
CDY39410	Canola	plastid	33.22	36.26
CDY26398	Canola	plastid	33.89	35.94
CDX78955	Canola	plastid	34.06	34.52
CDX99350	Canola	plastid	33.56	34.01
CDY36698	Canola	cytosol	24.33	28.49
CDX76040	Canola	cytosol	12.25	25.09
CDY30971	Canola	cytosol	19.13	25.05
CDX67678	Canola	cytosol, endoplasmic reticulum, plastid	19.3	24.89
CDY35774	Canola	cytosol	12.08	24.74
CDX72067	Canola	cytosol	18.96	24.41
CDY06130	Canola	cytosol	18.62	24.03
CDY23854	Canola	cytosol	17.95	22.25
CDY06929	Canola	cytosol, endoplasmic reticulum, plastid	18.12	22.18
CDY14765	Canola	cytosol, endoplasmic reticulum, plastid	17.95	21.97
CDX79940	Canola	cytosol	11.58	21.77
CDY33841	Canola	cytosol	2.85	17.17
TraesCS7A01G022800.1	Wheat	cytosol	39.93	15.9

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.2	MapMan:26.8.3.1.1	Gene3D:3.30.710.10	UniProt:A0A078IKQ6	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	EnsemblPlants:CDY50004	ProteinID:CDY50004	ProteinID:CDY50004.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00094211001	InterPro:IPR000210	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900
PFAM:PF12313	PFAM:PF13637	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413
PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695
UniPathway:UPA00143	UniParc:UPI0004EE0304	SEG:seg	:	:	:

Description

BnaC08g12110DBnaC08g12110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKQ6]

Coordinates

chrLK032874:+:43384..45512

Molecular Weight (calculated)

66207.1 Da

IEP (calculated)

4.928

GRAVY (calculated)

-0.249

Length

596 amino acids

Sequence
(BLAST)

001: MDTIAGFSDS YEISNQSSTI LSAAPEPTDN TESSVVRPPE LSPVDVSALQ LLSNNLESLF DSPESFYGDA KLILADDREV SFHRFIVAAR SPFFKNALAA
101: AAEKDPQKST AGTKLELKNI ATDYEVGFDS VAAVMAYIYS GRVRPPPKGV SDCADEDCRH VSCRPAVDFM VEVLYLAFLF EIPELVTMYQ RHLLDVVDKV
201: MIEDALVILK LANICGKECK KLFDKCTEII VKSNVDIVTL NKSLPQQIVK QVIDIRKELG LEVPEPDKHV SNIHKALECD DLVLVNMLLE EGRTNLDEAY
301: ALHFAVAYCA VETATELLNR EVADVNRRNP RGYTVLHVAA MRKEPSLIAF LLTKGANASD MALDGRTALL IAKQVTKAGE YNCITEEGKD SPKGRLCVEI
401: LEQPENLGPF PEDASSACLA LAPDAELKIR LIDFENRVQM ARCLFPTEAQ LAMELAPMKG TSEFTVDSQE LDGTGAKRSA PDQYMVPFVF EEKHRSRLEA
501: LSKTVEFGRR FFPRCSTLLD KIADCETLSI LAFVEKDTPE NRVEKRQKYM EIQESLLMAF SKDNEEFGKS SRSGSSSSTS KSTKRSNGKP SHRRRP

Best Arabidopsis Sequence Match ( AT1G64280.1 )
(BLAST)

001: MDTTIDGFAD SYEISSTSFV ATDNTDSSIV YLAAEQVLTG PDVSALQLLS NSFESVFDSP DDFYSDAKLV LSDGREVSFH RCVLSARSSF FKSALAAAKK
101: EKDSNNTAAV KLELKEIAKD YEVGFDSVVT VLAYVYSSRV RPPPKGVSEC ADENCCHVAC RPAVDFMLEV LYLAFIFKIP ELITLYQRHL LDVVDKVVIE
201: DTLVILKLAN ICGKACMKLL DRCKEIIVKS NVDMVSLEKS LPEELVKEII DRRKELGLEV PKVKKHVSNV HKALDSDDIE LVKLLLKEDH TNLDDACALH
301: FAVAYCNVKT ATDLLKLDLA DVNHRNPRGY TVLHVAAMRK EPQLILSLLE KGASASEATL EGRTALMIAK QATMAVECNN IPEQCKHSLK GRLCVEILEQ
401: EDKREQIPRD VPPSFAVAAD ELKMTLLDLE NRVALAQRLF PTEAQAAMEI AEMKGTCEFI VTSLEPDRLT GTKRTSPGVK IAPFRILEEH QSRLKALSKT
501: VELGKRFFPR CSAVLDQIMN CEDLTQLACG EDDTAEKRLQ KKQRYMEIQE TLKKAFSEDN LELGNSSLTD STSSTSKSTG GKRSNRKLSH RRR

Arabidopsis Description

NPR1Regulatory protein NPR1 [Source:UniProtKB/Swiss-Prot;Acc:P93002]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.