Factsheet for GSMUA_Achr2P16670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P20500_001
GSMUA_Achr3P25020_001
GSMUA_Achr5P16630_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P05800_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31220_001
GSMUA_Achr9P19410_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64280.1	GSMUA_Achr10P...	AT1G22070.1	10659709
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G22070.1	10659709
AT1G64280.1	GSMUA_AchrUn_...	AT1G22070.1	10659709
AT1G64280.1	GSMUA_Achr10P...	AT1G22070.1	10662863
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G22070.1	10662863
AT1G64280.1	GSMUA_AchrUn_...	AT1G22070.1	10662863
AT1G64280.1	GSMUA_Achr10P...	AT1G22070.1	15634206
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G22070.1	15634206
AT1G64280.1	GSMUA_AchrUn_...	AT1G22070.1	15634206
AT1G64280.1	GSMUA_Achr7P18000_001	AT1G26830.1	19490895
AT1G64280.1	GSMUA_Achr8P16990_001	AT1G26830.1	19490895
AT1G64280.1	GSMUA_AchrUn_...	AT1G26830.1	19490895
AT1G64280.1	GSMUA_AchrUn_...	AT1G26830.1	19490895
AT1G64280.1	GSMUA_Achr10P...	AT1G77920.1	10662863
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G77920.1	10662863
AT1G64280.1	GSMUA_AchrUn_...	AT1G77920.1	10662863
AT1G64280.1	GSMUA_Achr10P...	AT1G77920.1	15634206
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G77920.1	15634206
AT1G64280.1	GSMUA_AchrUn_...	AT1G77920.1	15634206
AT1G64280.1	GSMUA_Achr2P20500_001	AT4G14110.1	19490895
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr8P31220_001	AT5G42970.1	19490895
AT1G64280.1	GSMUA_Achr9P19410_001	AT5G42970.1	19490895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P09190_001	Banana	cytosol	79.79	81.04
GSMUA_Achr6P00950_001	Banana	nucleus	84.42	78.25
Os01t0194300-01	Rice	cytosol	67.98	68.21
EES00131	Sorghum	cytosol	67.64	67.75
Zm00001d039469_P001	Maize	cytosol	66.78	66.9
TraesCS3D01G107500.1	Wheat	cytosol	65.41	65.86
TraesCS3B01G123800.1	Wheat	cytosol	64.73	65.51
TraesCS3A01G105400.1	Wheat	cytosol	64.38	65.16
VIT_11s0016g01990.t01	Wine grape	cytosol	64.04	64.04
HORVU3Hr1G019230.6	Barley	cytosol	65.07	63.55
Solyc07g040690.2.1	Tomato	cytosol	62.67	63.54
TraesCS7D01G019000.1	Wheat	cytosol, mitochondrion	50.86	60.99
TraesCS4A01G470500.1	Wheat	cytosol	50.51	60.33
KRH37416	Soybean	cytosol	58.9	59.11
GSMUA_Achr8P05490_001	Banana	cytosol	54.28	54.56
GSMUA_AchrUn_...	Banana	cytosol	53.08	53.91
GSMUA_Achr3P25880_001	Banana	cytosol	51.54	52.99
TraesCS7A01G021800.1	Wheat	cytosol, plastid	49.83	52.06
CDY34413	Canola	cytosol	48.97	50.26
CDY25575	Canola	cytosol	48.8	50.0
Bra027690.1-P	Field mustard	cytosol, plastid	48.8	50.0
AT1G64280.1	Thale cress	cytosol	48.46	47.72
Bra013950.1-P	Field mustard	cytosol	47.26	47.67
CDY50004	Canola	cytosol	47.43	46.48
AT4G26120.2	Thale cress	cytosol, plastid	46.92	45.59
CDX89364	Canola	cytosol	47.26	45.39
CDX94376	Canola	cytosol	47.09	45.38
Bra013952.1-P	Field mustard	cytosol	46.06	44.46
GSMUA_Achr5P02120_001	Banana	cytosol	44.35	44.35
CDX89362	Canola	cytosol	45.72	44.13
CDX94371	Canola	cytosol	45.55	43.97
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	43.66	42.86
GSMUA_Achr5P16220_001	Banana	cytosol	21.92	29.02
Bra010439.1-P	Field mustard	cytosol	46.23	28.07
CDY14314	Canola	nucleus	39.21	27.2
GSMUA_Achr5P08160_001	Banana	cytosol	19.86	27.17
GSMUA_Achr3P08710_001	Banana	cytosol	19.69	27.0
GSMUA_Achr8P22070_001	Banana	cytosol	19.18	26.99
GSMUA_AchrUn_...	Banana	cytosol	19.18	26.73
GSMUA_Achr11P...	Banana	cytosol	19.69	26.62
GSMUA_AchrUn_...	Banana	cytosol	18.66	24.33
TraesCS7A01G022800.1	Wheat	cytosol	58.05	22.65

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.2	MapMan:26.8.3.1.1	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G16670_001
EnsemblPlants:GSMUA_Achr2P16670_001	EnsemblPlants:GSMUA_Achr2T16670_001	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
UniProt:M0S8K8	InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12313
PFAM:PF13637	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI0002968FA9	SEG:seg

Description

Putative Regulatory protein NPR1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G16670_001]

Coordinates

chr2:-:17461174..17465498

Molecular Weight (calculated)

64252.1 Da

IEP (calculated)

5.543

GRAVY (calculated)

-0.095

Length

584 amino acids

Sequence
(BLAST)

001: MEYSHLTAVT ALSDSDNCSS VHFSGEAAGA PDSAAPAAEV EALRRLSDNL GSAFQSPDFE FLADARIAVG HTGDGRAPPL EVGVHRCVLS ARSPFFREVF
101: AKRGKGAAMP VRVELKELVR EFEVGYDALV AVLGYLYTGR VAPLPRAVCM CVDEVCPHEA CRPAVDFMAE VLYASFSFQI SELVSLFQRH LLDILDKVAA
201: DDIPMVLSVA KLCDKSCASL LNKCIEIVVR SDLDVITLEK TMPPDIVKHI MDSRLNLGLV GPEGSSFPDK HVRRIHGALD CDDVELVRML LKEGNTTLDD
301: ACALHYAVAY CDSKITTELL DLALADVNHR NLRGYTVLHI AAMCKEPKII VSLLTKGARP SDLTVDGRKA LQISKRLTNS MEYLRSTEEG EASPKSRLCI
401: EILEQAERSD PQVGEASVSL AIAGDDLRGR LLYLENRVAL ARLLFPMEAR VAMDIAQVDG TLEFTLGSAA NHSTGNRRTA MDLNEAPFKI KEEHLARMRA
501: LSRTVELGKR FFPRCSEVIN KIMDDDITEI TGFGHNSSEE KRRRFLELQD VLSKAFSEDK EEFDRSSLSS SSSSTSVGVI RTRR

Best Arabidopsis Sequence Match ( AT1G64280.1 )
(BLAST)

001: MDTTIDGFAD SYEISSTSFV ATDNTDSSIV YLAAEQVLTG PDVSALQLLS NSFESVFDSP DDFYSDAKLV LSDGREVSFH RCVLSARSSF FKSALAAAKK
101: EKDSNNTAAV KLELKEIAKD YEVGFDSVVT VLAYVYSSRV RPPPKGVSEC ADENCCHVAC RPAVDFMLEV LYLAFIFKIP ELITLYQRHL LDVVDKVVIE
201: DTLVILKLAN ICGKACMKLL DRCKEIIVKS NVDMVSLEKS LPEELVKEII DRRKELGLEV PKVKKHVSNV HKALDSDDIE LVKLLLKEDH TNLDDACALH
301: FAVAYCNVKT ATDLLKLDLA DVNHRNPRGY TVLHVAAMRK EPQLILSLLE KGASASEATL EGRTALMIAK QATMAVECNN IPEQCKHSLK GRLCVEILEQ
401: EDKREQIPRD VPPSFAVAAD ELKMTLLDLE NRVALAQRLF PTEAQAAMEI AEMKGTCEFI VTSLEPDRLT GTKRTSPGVK IAPFRILEEH QSRLKALSKT
501: VELGKRFFPR CSAVLDQIMN CEDLTQLACG EDDTAEKRLQ KKQRYMEIQE TLKKAFSEDN LELGNSSLTD STSSTSKSTG GKRSNRKLSH RRR

Arabidopsis Description

NPR1Regulatory protein NPR1 [Source:UniProtKB/Swiss-Prot;Acc:P93002]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.