Factsheet for GSMUA_Achr3P25880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P20500_001
GSMUA_Achr3P25020_001
GSMUA_Achr5P16630_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P05800_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31220_001
GSMUA_Achr9P19410_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64280.1	GSMUA_Achr10P...	AT1G22070.1	10659709
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G22070.1	10659709
AT1G64280.1	GSMUA_AchrUn_...	AT1G22070.1	10659709
AT1G64280.1	GSMUA_Achr10P...	AT1G22070.1	10662863
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G22070.1	10662863
AT1G64280.1	GSMUA_AchrUn_...	AT1G22070.1	10662863
AT1G64280.1	GSMUA_Achr10P...	AT1G22070.1	15634206
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G22070.1	15634206
AT1G64280.1	GSMUA_AchrUn_...	AT1G22070.1	15634206
AT1G64280.1	GSMUA_Achr7P18000_001	AT1G26830.1	19490895
AT1G64280.1	GSMUA_Achr8P16990_001	AT1G26830.1	19490895
AT1G64280.1	GSMUA_AchrUn_...	AT1G26830.1	19490895
AT1G64280.1	GSMUA_AchrUn_...	AT1G26830.1	19490895
AT1G64280.1	GSMUA_Achr10P...	AT1G77920.1	10662863
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G77920.1	10662863
AT1G64280.1	GSMUA_AchrUn_...	AT1G77920.1	10662863
AT1G64280.1	GSMUA_Achr10P...	AT1G77920.1	15634206
AT1G64280.1	GSMUA_Achr5P16630_001	AT1G77920.1	15634206
AT1G64280.1	GSMUA_AchrUn_...	AT1G77920.1	15634206
AT1G64280.1	GSMUA_Achr2P20500_001	AT4G14110.1	19490895
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	10659709
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	10662863
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	12383081
AT1G64280.1	GSMUA_Achr10P...	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr11P...	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr3P25020_001	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr8P05800_001	AT5G06960.1	15634206
AT1G64280.1	GSMUA_Achr8P31220_001	AT5G42970.1	19490895
AT1G64280.1	GSMUA_Achr9P19410_001	AT5G42970.1	19490895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05490_001	Banana	cytosol	80.99	79.17
GSMUA_AchrUn_...	Banana	cytosol	72.54	71.65
GSMUA_Achr2P16670_001	Banana	cytosol	52.99	51.54
GSMUA_Achr7P09190_001	Banana	cytosol	50.35	49.74
VIT_11s0016g01990.t01	Wine grape	cytosol	49.47	48.12
GSMUA_Achr6P00950_001	Banana	nucleus	52.99	47.78
Solyc07g040690.2.1	Tomato	cytosol	48.06	47.4
KRH37416	Soybean	cytosol	48.42	47.25
CDY25575	Canola	cytosol	43.31	43.16
Bra027690.1-P	Field mustard	cytosol, plastid	43.13	42.98
CDY34413	Canola	cytosol	42.96	42.88
AT1G64280.1	Thale cress	cytosol	43.13	41.32
Bra013950.1-P	Field mustard	cytosol	41.2	40.41
CDY50004	Canola	cytosol	41.55	39.6
CDX89364	Canola	cytosol	41.02	38.32
GSMUA_Achr5P02120_001	Banana	cytosol	39.26	38.18
Bra013952.1-P	Field mustard	cytosol	40.49	38.02
CDX94371	Canola	cytosol	40.49	38.02
CDX94376	Canola	cytosol	40.49	37.95
AT4G26120.2	Thale cress	cytosol, plastid	40.14	37.94
CDX89362	Canola	cytosol	40.14	37.69
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	39.08	37.31
GSMUA_Achr5P16220_001	Banana	cytosol	21.48	27.66
GSMUA_Achr11P...	Banana	cytosol	20.07	26.39
GSMUA_AchrUn_...	Banana	cytosol	19.37	26.25
GSMUA_Achr3P08710_001	Banana	cytosol	19.54	26.06
GSMUA_Achr8P22070_001	Banana	cytosol	19.01	26.02
GSMUA_Achr5P08160_001	Banana	cytosol	19.54	26.0
GSMUA_AchrUn_...	Banana	cytosol	18.84	23.88
Bra010439.1-P	Field mustard	cytosol	40.14	23.7
CDY14314	Canola	nucleus	33.8	22.8

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.2	MapMan:26.8.3.1.1	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr3G25880_001
EnsemblPlants:GSMUA_Achr3P25880_001	EnsemblPlants:GSMUA_Achr3T25880_001	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
UniProt:M0SHV4	InterPro:NPR1/NIM1-like_C	PFAM:PF00651	PFAM:PF12313	PFAM:PF12796	PFscan:PS50097
PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI000296E071	SEG:seg	:	:

Description

Putative Regulatory protein NPR1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G25880_001]

Coordinates

chr3:+:25921646..25927005

Molecular Weight (calculated)

63332.1 Da

IEP (calculated)

6.609

GRAVY (calculated)

-0.174

Length

568 amino acids

Sequence
(BLAST)

001: MEAAGTFCES RITSGGSLCY AAPVAAEVAA LSRLSEHLGS LLRTPGLAFC SDARITVRSA GGDPPHEVPV HRCVLSARSP FFRDKFAAGA VALELGEVVA
101: GFEVGCEALE VVLQYVYTGR LEELPRGVAE CVDETCRRHE ACWPAVHFML RVLHAASTFE INELVSLFQR RLLDILEKVA MNEVLSILFV ANLNYKLCQR
201: LFMKAIDMVV NSDISYITLQ KKLPSNVVKQ IKQSRSNLGL DGQENFKFPD KHVKSIYGAL DSDDIELVKL LLEEGHTTLN DAKGLHYAVA SCDSKITKEL
301: LDLGLADVNS RDHQNYTVLH VAAMRKDPEI IMSLLTMEAR PLEITSDGRT ALQISKRLTR STDYYRSTEQ GKPSPRERLC IEMLQRAEMI ETFTEVTSVP
401: VEMTSDNLHE KLLYLESRVW LAERLFPTEA KAAMNNANVD GTLKVHSSCL THLCAGNKRS AEDVVKASFR MTEENLSRME ALTKTVQLGM HFFPRCSKVI
501: DKILGDDLSE LSIVEHINTE ERKNRYTEIL EEINNAFTQD KTAFDRSVSC STSSSKSARA VRSKAARK

Best Arabidopsis Sequence Match ( AT1G64280.1 )
(BLAST)

001: MDTTIDGFAD SYEISSTSFV ATDNTDSSIV YLAAEQVLTG PDVSALQLLS NSFESVFDSP DDFYSDAKLV LSDGREVSFH RCVLSARSSF FKSALAAAKK
101: EKDSNNTAAV KLELKEIAKD YEVGFDSVVT VLAYVYSSRV RPPPKGVSEC ADENCCHVAC RPAVDFMLEV LYLAFIFKIP ELITLYQRHL LDVVDKVVIE
201: DTLVILKLAN ICGKACMKLL DRCKEIIVKS NVDMVSLEKS LPEELVKEII DRRKELGLEV PKVKKHVSNV HKALDSDDIE LVKLLLKEDH TNLDDACALH
301: FAVAYCNVKT ATDLLKLDLA DVNHRNPRGY TVLHVAAMRK EPQLILSLLE KGASASEATL EGRTALMIAK QATMAVECNN IPEQCKHSLK GRLCVEILEQ
401: EDKREQIPRD VPPSFAVAAD ELKMTLLDLE NRVALAQRLF PTEAQAAMEI AEMKGTCEFI VTSLEPDRLT GTKRTSPGVK IAPFRILEEH QSRLKALSKT
501: VELGKRFFPR CSAVLDQIMN CEDLTQLACG EDDTAEKRLQ KKQRYMEIQE TLKKAFSEDN LELGNSSLTD STSSTSKSTG GKRSNRKLSH RRR

Arabidopsis Description

NPR1Regulatory protein NPR1 [Source:UniProtKB/Swiss-Prot;Acc:P93002]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.